Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0192
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21170.1 68416.m02674 F-box family protein contains Pfam prof...    27   5.7  
At2g33390.1 68415.m04093 expressed protein                             27   5.7  
At4g21450.1 68417.m03103 vesicle-associated membrane family prot...    27   9.9  
At3g13100.1 68416.m01640 ABC transporter family protein similar ...    27   9.9  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    27   9.9  

>At3g21170.1 68416.m02674 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 394

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = -1

Query: 460 YWTSL---FLTSYKFGNSRYGSESSPAAIFRLA 371
           YW  +   FL S+ F   R+GSES P     LA
Sbjct: 229 YWFDISEQFLLSFDFSTERFGSESLPEGDSHLA 261


>At2g33390.1 68415.m04093 expressed protein 
          Length = 98

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 62  QEQCFAESTTGSEARPTEKIRRETQW 139
           + QC      G  +R T+KI+R  QW
Sbjct: 38  ESQCLLPPRKGGMSRSTDKIKRTVQW 63


>At4g21450.1 68417.m03103 vesicle-associated membrane family protein
           / VAMP family protein similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 295

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 333 PLNRSLQYDRRNLASLNIAAGELSEPYRELPNLYDVKKRDV-QYACLRMLF 482
           P N     D+R+     I + ++  P   +P L+D +K DV +   LR++F
Sbjct: 178 PENNEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIF 228


>At3g13100.1 68416.m01640 ABC transporter family protein similar to
           ATP-binding cassette transporter MRP8 GI:18031899 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00005
           ABC transporter
          Length = 1493

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 311 CVTVRAHRKISLSSIFHNAPXRSITSKILGRRHHASI*KGGTWIESGLGEQ 159
           C TV + +   LSSI    P  S   K+ GR+ + +      WI+SG  E+
Sbjct: 658 CGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIA---QSPWIQSGKVEE 705


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 311 CVTVRAHRKISLSSIFHNAPXRSITSKILGRRHHASI*KGGTWIESGLGEQ 159
           C TV + +   LSSI    P  S   K+ GR+ + +      WI+SG  E+
Sbjct: 635 CGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIA---QSPWIQSGKVEE 682


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,611,378
Number of Sequences: 28952
Number of extensions: 209717
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)