Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0190
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    29   0.48 
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    29   0.48 
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    28   1.1  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    28   1.1  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    28   1.1  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   2.5  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   2.5  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    27   3.4  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    27   3.4  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   4.4  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    26   4.4  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   7.8  

>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 498 DTGATPELDPADPVDAFLISIASTLKTFSPYHLN 599
           +  A+ E D  DP+DA++ S+  T  T  P  LN
Sbjct: 292 EQAASMEEDEVDPLDAYMASLVGTTDTIRPGLLN 325


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +1

Query: 286 IKTLPSPWTVVTAITKRKTMMNGTTNQGRSNKRTIVIPPMNQSRKLRGGVNQKESRKSHL 465
           ++ L  P+ V  A T     +NG    GRS    ++     QSR   G  N K   +SH+
Sbjct: 396 VRKLIGPYLVFMAST-----INGYEGTGRSLSLKLLQQLREQSRIYSGSGNNKSDSQSHI 450

Query: 466 TRRNLR 483
           + R L+
Sbjct: 451 SGRTLK 456


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/77 (25%), Positives = 33/77 (42%)
 Frame = +3

Query: 177 NIRDVHRRLWKKRLSDPNRSSKPYKYESQMAFMKAFYKDVAIPLDSGDCDYEEKDYDEWD 356
           ++R  H+R   ++ S PN+  K  +  S    ++    D  I   + D D EEK    W 
Sbjct: 154 DLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILEDDEEIEDVASDKDEEEK---PWS 210

Query: 357 NESGQEQQENNSDSSDE 407
            +   + +    DS DE
Sbjct: 211 GDEEDDDELVVKDSEDE 227


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 594  LNLAKSKIFAVVQEHDLEQI---MQKQPKD 674
            LNL K+KI   V  H L QI    +K+PKD
Sbjct: 1121 LNLPKTKILEKVSSHSLAQITALREKEPKD 1150


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +3

Query: 87  YMDFNAREVTWQKIGDELKRPA----VDCKIRWINI-RDVHRRLWKKRLSDPNRSSKPYK 251
           Y+    R     K+  E K P+    V CK+ +    +D+ +RL K    D N+S++   
Sbjct: 147 YLTITGRSGRTLKLSKEWKNPSKKWKVGCKLAYEFFPKDLRKRLQKLETEDMNKSNRKLL 206

Query: 252 YESQMAFMKAFYKDVAIPLDSGDCDYEEK 338
            ++   + K   K    PLD  +   +++
Sbjct: 207 QDATDEYAKFKDKFPEAPLDKDNLQTQKE 235


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 237 SKPYKYE-SQMAFMKAFYKDVAIPLDSGDCDYEEKDYDEWDNESGQEQQENNSDSS 401
           S+P+  + S+    K  + +    +   D + EE+D D+ D +  +++ E+N++++
Sbjct: 172 SEPHDVDTSKNGLSKKQHSEAQPEVQGNDDEVEEEDDDDDDEDEDEDEDEDNNNNN 227


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 306 LDSGDCDYEEKDYDEWDNESGQEQQENNSDSS 401
           +D     Y +  YDEWD     ++ + N   S
Sbjct: 63  VDDNGAGYVDNGYDEWDQSHYSDEDDENEKGS 94


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 159 CKIRWINIRDVHRRLWKKRLSDPNRSSKPYKY 254
           C  +  +++D+HR+L    +S+P  ++ P  Y
Sbjct: 2   CPSQHSSLKDIHRQLENTAISNPTENADPSSY 33


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +3

Query: 132 DELKRPAVDCKIRWINIRDVHRRLWKKRLSDPNRSSKPYKYESQMAFMKAFYKDVAIPLD 311
           D LK  A+ C  + +N R++   L K       R SKP    S+ A +++  K+ +  L 
Sbjct: 176 DALKL-ALQCSEKALNGRNI---LIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILF 231

Query: 312 SGDCDYEEKDYD 347
            G+ D+E  D D
Sbjct: 232 VGNLDFETTDAD 243


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 117 WQKIGDELKRPAVDCKIRWINIRDVHR 197
           W KIG ++ R   DC+ RW   RDV R
Sbjct: 335 WTKIGRKMARMPNDCRDRW---RDVVR 358


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 207 KKRLSDPNRSSKPYKYESQMAFMK-AFYKDVAIPLDSGDCDYEEKDYDEWDNESGQEQQE 383
           K++      S+ P + E++ +  + +F KDV   + S   +  E++  E+ +ESG+   E
Sbjct: 21  KEKEKSKGVSNVPNEVETESSSHEPSFKKDVDEEIPSLTAELSEEEEGEYSSESGRSTPE 80

Query: 384 NNSDSSDE 407
            + D  ++
Sbjct: 81  LSPDDFED 88


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 324 DYEEKDYDEWDNESGQEQQENNSDSSDE 407
           D E     E++ E+ QE +EN+SDS D+
Sbjct: 406 DNERMSPAEFELETTQEVEENDSDSHDD 433


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 285 YKDVAIPLDSGDCDYEEKDYDEWDNESGQEQQENNSD 395
           +  + IPL S   DYE    D    E   EQQ  NS+
Sbjct: 34  FTSILIPLISKSKDYESIKNDRIVTEVNYEQQLRNSE 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,920
Number of Sequences: 5004
Number of extensions: 46977
Number of successful extensions: 175
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)