Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0190
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036701-6|AAK68607.1|  139|Caenorhabditis elegans Hypothetical ...    48   6e-06
Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical pr...    40   0.001
AC006661-6|AAF39889.1|  312|Caenorhabditis elegans Hypothetical ...    40   0.001
U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF003130-3|AAB54123.1|  849|Caenorhabditis elegans Hypothetical ...    28   5.4  
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    28   5.4  
Z81077-8|CAB03072.2|  528|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF067947-7|AAK68397.2|  295|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF036701-6|AAK68607.1|  139|Caenorhabditis elegans Hypothetical
           protein ZC416.1 protein.
          Length = 139

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 26/90 (28%), Positives = 46/90 (51%)
 Frame = +3

Query: 24  DVTLISLVKQNPVLYDYNNPKYMDFNAREVTWQKIGDELKRPAVDCKIRWINIRDVHRRL 203
           ++ LI+ VK  P LYD ++  Y   + R   W +I + L+  +   K RW  +RD +++ 
Sbjct: 50  NIRLIAEVKARPFLYDQSDEGYNLLSWRNSAWNEIAENLETTSEHVKTRWKTLRDRYKKE 109

Query: 204 WKKRLSDPNRSSKPYKYESQMAFMKAFYKD 293
            KK       SS  + ++  + F++A  KD
Sbjct: 110 EKKERVSKKASS--WVFQRPLKFIQAHLKD 137


>Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01G12.1 protein.
          Length = 423

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
 Frame = +3

Query: 9   FRDKTDVTLISLVKQNPVLYDYNNPKYMDFNAREVTWQKIGDELKR--PAVDCKIRWINI 182
           F+   +  LI+ V++ P LY+++     D   R+  W+ I   +     A   K RW+ +
Sbjct: 3   FQPAFNARLINEVRKYPCLYNHSRRGSGDTMERQRLWESIAKNIDPNCAAEFAKKRWLQL 62

Query: 183 RDVHRRLWKKRLSDPNRSSKPYKYESQMAFMKAFYKD-VAIPLDSGDCDYEEKDYDE 350
           RD +R+  K  + +   +   + Y +Q++++  F KD +    D G    +   +DE
Sbjct: 63  RDRYRKELKIAIKNGFVTPVRWCYFNQLSWLDPFLKDNIGQAADEGKKTGKSDSFDE 119


>AC006661-6|AAF39889.1|  312|Caenorhabditis elegans Hypothetical
           protein H20J04.3 protein.
          Length = 312

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = +3

Query: 33  LISLVKQNPVLYDYNNPKYMDFNAREVTWQKIGDELKRPAVDCKI--RWINIRD--VHRR 200
           LI  V+++P LYD  +PKY   + R   W  I D+L+ P     I  +W   RD  V  +
Sbjct: 123 LILEVRRHPCLYDVRDPKYRHGDCRTQAWGMIIDKLRYPGTVPSIYKQWKKHRDRYVREK 182

Query: 201 LWKKRLSDPN 230
              + L DPN
Sbjct: 183 RRLRNLGDPN 192


>U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical
           protein M02F4.1 protein.
          Length = 399

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 309 DSGDCDYEEKDYDEWDNESGQEQQENNSDSSD 404
           D  + DYE +DY+E +N+S +  + + +D  D
Sbjct: 218 DEDESDYENEDYEEEENKSRKANRRSRTDDDD 249


>Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical
           protein R11A5.1b protein.
          Length = 896

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +3

Query: 309 DSGDCDYEEKDYDEWDNESGQEQQENNSDSSDE 407
           D  + D +E+D +E +NES +E++++  + S+E
Sbjct: 588 DEEEEDEDEEDEEEEENESEEEEEDDEDEESEE 620


>Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical
           protein R11A5.1a protein.
          Length = 906

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +3

Query: 309 DSGDCDYEEKDYDEWDNESGQEQQENNSDSSDE 407
           D  + D +E+D +E +NES +E++++  + S+E
Sbjct: 598 DEEEEDEDEEDEEEEENESEEEEEDDEDEESEE 630


>U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical
           protein F52C9.5 protein.
          Length = 618

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 288 KDVAIPLDSGDCDYEEKDYDEWDNESGQEQQENNSDSSDEPI 413
           +D    +DS D     K   E +N   ++ ++NN+D+S++P+
Sbjct: 511 RDCVDEIDSTDMRMSIKRAGELENNDHEQIEDNNTDASEDPV 552


>AF003130-3|AAB54123.1|  849|Caenorhabditis elegans Hypothetical
           protein F55A12.5 protein.
          Length = 849

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +3

Query: 216 LSDPNRSSKPYKYESQMAFMKAFYKDVAIPLDSGDCDYEEKD-YDEWDNESGQ----EQQ 380
           LS    S    KY  +M   K   +   I  +S + +YEE+D Y+E++++  +    E++
Sbjct: 641 LSSGESSVVTVKYTPKMDVQKKKVEIPVISSESEEEEYEEEDEYEEYEDDEDEDEYYEEE 700

Query: 381 ENNSDSSDE 407
           E N    D+
Sbjct: 701 EENEVEDDD 709


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 309 DSGDCDYEEKDYDEWDNESGQEQQENNSD 395
           D GD D+E K+ +E ++    E  EN SD
Sbjct: 87  DDGDEDFEMKEAEEHESSDESEADENASD 115


>Z81077-8|CAB03072.2|  528|Caenorhabditis elegans Hypothetical
           protein F36A2.9a protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +1

Query: 346 MNGTTNQGRSNKRTIVIPPMNQSRKLRGGVNQKESRKSHLTRRNLRPPTSAILAP 510
           +NGT  +G   +  IV  P    +KL     QKE +K+ LTR+N R  +     P
Sbjct: 452 INGTFTKGNHGRFEIVEEPQ---KKLEEA--QKEEQKALLTRQNTRAQSEQATTP 501


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 78   NPKYMDFNAREVTWQKIGDELKRPAVDC-KIRWINIRDVHRRLWKKR 215
            NP  +  +  E   +K G E K P  DC  +   N+ D   R++KKR
Sbjct: 890  NPSKLSDSEYEEYKKKCGKERKTPKPDCDDVDTNNLSDEEYRMYKKR 936


>AF067947-7|AAK68397.2|  295|Caenorhabditis elegans Hypothetical
           protein T10B5.3 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 318 DCDYEEKDYDEWDNESGQEQQENNSDSSDE 407
           D D E  + D W++   +E +E N D  DE
Sbjct: 235 DDDGESSEDDWWEDNELKEDEEENQDDDDE 264


>Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical
           protein F54C9.9 protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 309 DSGDCDYEEKDYDEWDNESGQEQQENNSDSSDE 407
           D  D DYE+ D  + D    +EQ+ ++ D  DE
Sbjct: 409 DMEDSDYEDYDNLDVDELKREEQEADDDDEEDE 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,917,926
Number of Sequences: 27780
Number of extensions: 265720
Number of successful extensions: 1075
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)