Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0190
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               29   0.055
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.3  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   8.3  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   8.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 28.7 bits (61), Expect = 0.055
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 243 PYKYESQMAFMKAFYKDVAIPLDSGDCDYEEKDYDEWDNESGQEQQE-NNSDSSDE 407
           P  Y + + F+    +    P +  D    +KD DE DNE+ + Q+E  NS SSD+
Sbjct: 61  PKNYTTPVNFVAGGIQQAGKPKEETD----DKDDDESDNENIKSQKEFPNSSSSDD 112


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 324 DYEEKDYDEWDNESGQEQQ 380
           DYE+ DY   DN + + ++
Sbjct: 115 DYEDNDYGNQDNRNDRRKK 133


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 54  NPVLYDYNNPKY 89
           NP++Y  ++PKY
Sbjct: 327 NPIVYGISHPKY 338


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 324 DYEEKDYDEWDNESGQE 374
           DYE++  D  D ESG E
Sbjct: 234 DYEKRSTDFQDVESGSE 250


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 324 DYEEKDYDEWDNESGQE 374
           DYE++  D  D ESG E
Sbjct: 234 DYEKRSTDFQDVESGSE 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,696
Number of Sequences: 438
Number of extensions: 3345
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)