Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0189
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   180   5e-47
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   2.2  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    25   2.9  
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    24   6.7  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    24   8.8  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    24   8.8  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  180 bits (439), Expect = 5e-47
 Identities = 83/119 (69%), Positives = 99/119 (83%), Gaps = 1/119 (0%)
 Frame = +1

Query: 16  YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 195
           YK+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 196 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGK 369
           L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L  FP GK
Sbjct: 66  LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGK 124


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +3

Query: 57  RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 236
           R+Y    R ++PY  S    SS        S  ++  STNS      N   SR T + + 
Sbjct: 90  RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149

Query: 237 H 239
           H
Sbjct: 150 H 150


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 107 RRHAIRPGISFSANIISFRPHSANFSS 27
           R  A++PG +   +I  +RP   NF+S
Sbjct: 31  RERAVKPGYTAPEDIKRYRPGRGNFAS 57


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 272 WLP*EYPSMPGREKLMTSIF 331
           +LP EYP MP   + +T I+
Sbjct: 56  FLPDEYPMMPPNVRFLTKIY 75


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 225 PLYLCSQFY*SLNKNRCLYCH 163
           PL+  SQ Y +L ++ CLYCH
Sbjct: 89  PLFF-SQMY-NLLRSTCLYCH 107


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 147 YSGTFEYFSWSIFPTTCHKAWHFFLC*HNFFSAPFSQFL 31
           Y   +  ++W  F  T +K  H+FL  H +   P + F+
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVY--VPLNSFM 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,641,174
Number of Sequences: 5004
Number of extensions: 32520
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)