Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0189
(371 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S57284-1|AAB25906.1| 437|Caenorhabditis elegans S-adenosylhomoc... 198 1e-51
M64306-1|AAA28062.1| 437|Caenorhabditis elegans S-adenosylhomoc... 198 1e-51
AF043699-5|AAB97565.1| 437|Caenorhabditis elegans Hypothetical ... 198 1e-51
AC006659-2|AAF39883.2| 977|Caenorhabditis elegans Hypothetical ... 29 0.80
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 27 5.7
Z93391-4|CAC42353.1| 397|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr... 26 9.9
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ... 26 9.9
>S57284-1|AAB25906.1| 437|Caenorhabditis elegans
S-adenosylhomocysteine hydrolase protein.
Length = 437
Score = 198 bits (482), Expect = 1e-51
Identities = 89/121 (73%), Positives = 104/121 (85%)
Frame = +1
Query: 7 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 186
KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVL
Sbjct: 5 KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVL 64
Query: 187 IETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDG 366
IETL LGAEVQWSS NI+STQD AAAA+ G+P+YAWKGETD+EY WCIEQT++F DG
Sbjct: 65 IETLTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDG 124
Query: 367 K 369
+
Sbjct: 125 Q 125
>M64306-1|AAA28062.1| 437|Caenorhabditis elegans
S-adenosylhomocysteine hydrolase protein.
Length = 437
Score = 198 bits (482), Expect = 1e-51
Identities = 89/121 (73%), Positives = 104/121 (85%)
Frame = +1
Query: 7 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 186
KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVL
Sbjct: 5 KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVL 64
Query: 187 IETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDG 366
IETL LGAEVQWSS NI+STQD AAAA+ G+P+YAWKGETD+EY WCIEQT++F DG
Sbjct: 65 IETLTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDG 124
Query: 367 K 369
+
Sbjct: 125 Q 125
>AF043699-5|AAB97565.1| 437|Caenorhabditis elegans Hypothetical
protein K02F2.2 protein.
Length = 437
Score = 198 bits (482), Expect = 1e-51
Identities = 89/121 (73%), Positives = 104/121 (85%)
Frame = +1
Query: 7 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 186
KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVL
Sbjct: 5 KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVL 64
Query: 187 IETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDG 366
IETL LGAEVQWSS NI+STQD AAAA+ G+P+YAWKGETD+EY WCIEQT++F DG
Sbjct: 65 IETLTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDG 124
Query: 367 K 369
+
Sbjct: 125 Q 125
>AC006659-2|AAF39883.2| 977|Caenorhabditis elegans Hypothetical
protein H16O14.1 protein.
Length = 977
Score = 29.5 bits (63), Expect = 0.80
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 270 CSCGLVLCTI-NVTAGPLYLCSQFY*SLNKNRCLYCHV*AAGYSGTFEYFSWSI 112
C CG+++ I N+TA Y +N L + + G+ F YF WS+
Sbjct: 442 CECGILIAVIENITALITQFFLMCYLGVNAACALQSLLKSPGWRPGFRYFHWSL 495
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 324 LVISFSLPGIDGYSYGNQCSCGLVLCTINVT 232
+V + ++ G DG +Y N C + C I +T
Sbjct: 874 IVANMTVCGSDGTTYSNLCELKMFACNIKLT 904
>Z93391-4|CAC42353.1| 397|Caenorhabditis elegans Hypothetical
protein W04G5.10 protein.
Length = 397
Score = 25.8 bits (54), Expect = 9.9
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = -2
Query: 283 LRQPVQLRPRLVYYKCYCWTIVP 215
L +P P++ Y+ CW ++P
Sbjct: 344 LSEPEHCAPKMYYFMKSCWNLIP 366
>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 28 DEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGAR--IAGSLHMTVQTAVLIET 195
D K AE I+ A + MP L C ++ + GAR +A +++++++ + + T
Sbjct: 769 DRKSAEENMTNILHAIESMPSLFLCLLEWLDCEPESGARTSLAFTINLSLERYLAVST 826
>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 28 DEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGAR--IAGSLHMTVQTAVLIET 195
D K AE I+ A + MP L C ++ + GAR +A +++++++ + + T
Sbjct: 769 DRKSAEENMTNILHAIESMPSLFLCLLEWLDCEPESGARTSLAFTINLSLERYLAVST 826
>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
protein.
Length = 1139
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 28 DEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGAR--IAGSLHMTVQTAVLIET 195
D K AE I+ A + MP L C ++ + GAR +A +++++++ + + T
Sbjct: 769 DRKSAEENMTNILHAIESMPSLFLCLLEWLDCEPESGARTSLAFTINLSLERYLAVST 826
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,163,340
Number of Sequences: 27780
Number of extensions: 186926
Number of successful extensions: 436
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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