Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0189
         (371 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   2.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   2.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   3.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   8.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   8.2  

>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 192 LNKNRCLYCHV 160
           +N+NRC YC +
Sbjct: 66  INRNRCQYCRL 76


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 192 LNKNRCLYCHV 160
           +N+NRC YC +
Sbjct: 115 INRNRCQYCRL 125


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 163 MTVQTAVLIETLIELGAEVQWSSSNIYSTQ 252
           +TVQ  + +  LIE+  + Q  ++N++  Q
Sbjct: 59  LTVQLGLKLSQLIEMNLKNQVMTTNVWVEQ 88


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 17/73 (23%), Positives = 28/73 (38%)
 Frame = +1

Query: 28   DEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLIEL 207
            D     W  K + +   +       RR+    +  +G   A S  + V+  V  E+  E 
Sbjct: 1148 DTDSENWTPKMMAVEPTDKQANSKTRRQEMMREAGRGIESAKSYVVDVRVHVPGESESET 1207

Query: 208  GAEVQWSSSNIYS 246
               + WS SN+ S
Sbjct: 1208 VLTLAWSESNVES 1220


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 12/75 (16%), Positives = 25/75 (33%)
 Frame = +1

Query: 73  EKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQ 252
           +K M  L+ C+  ++ A +  G  +        +  + +    E   +V W     +   
Sbjct: 217 KKAMSDLVICKLSHSNASVAGGMEMILLCEKVAKEDIQVRFFEEKDGQVLWEGFGDFQPV 276

Query: 253 DEAAAALVAVGIPIY 297
                  +A   P Y
Sbjct: 277 HVHKQTAIAFRTPTY 291


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 12/75 (16%), Positives = 25/75 (33%)
 Frame = +1

Query: 73  EKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQ 252
           +K M  L+ C+  ++ A +  G  +        +  + +    E   +V W     +   
Sbjct: 217 KKAMSDLVICKLSHSNASVAGGMEMILLCEKVAKEDIQVRFFEEKDGQVLWEGFGDFQPV 276

Query: 253 DEAAAALVAVGIPIY 297
                  +A   P Y
Sbjct: 277 HVHKQTAIAFRTPTY 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,153
Number of Sequences: 438
Number of extensions: 2323
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)