Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0189
         (371 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosyl-L-h...   150   3e-37
At3g23810.1 68416.m02993 adenosylhomocysteinase, putative / S-ad...   146   4e-36
At2g34360.1 68415.m04207 MATE efflux family protein similar to r...    29   1.3  
At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Sin...    29   1.3  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    27   3.0  
At5g64860.1 68418.m08159 4-alpha-glucanotransferase, putative / ...    27   4.0  
At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein ...    27   5.3  

>At4g13940.1 68417.m02157 adenosylhomocysteinase /
           S-adenosyl-L-homocysteine hydrolase / AdoHcyase (SAHH)
           identical to SP|O23255 Adenosylhomocysteinase (EC
           3.3.1.1) (S-adenosyl-L-homocysteine hydrolase)
           (AdoHcyase) {Arabidopsis thaliana}; strong similarity to
           SP|P50248 Adenosylhomocysteinase (EC 3.3.1.1) {Nicotiana
           sylvestris}
          Length = 485

 Score =  150 bits (363), Expect = 3e-37
 Identities = 70/117 (59%), Positives = 86/117 (73%)
 Frame = +1

Query: 16  YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 195
           YK+ D   A++GR E+ LAE EMPGLMACR ++ P++  KGARI GSLHMT+QTAVLIET
Sbjct: 14  YKVKDMSQADFGRLELELAEVEMPGLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIET 73

Query: 196 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDG 366
           L  LGAEV+W S NI+STQD AAAA+      ++AWKGET  EY WC E+ L +  G
Sbjct: 74  LTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPG 130


>At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /
           S-adenosyl-L-homocysteine hydrolase, putative /
           AdoHcyase, putative strong similarity to
           SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1)
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
           {Nicotiana sylvestris}; contains Pfam profile PF00670:
           S-adenosyl-L-homocysteine hydrolase, NAD binding domain
          Length = 485

 Score =  146 bits (354), Expect = 4e-36
 Identities = 69/117 (58%), Positives = 86/117 (73%)
 Frame = +1

Query: 16  YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 195
           YK+ D   A++GR EI LAE EMPGL++C  ++ P++ LKGARI GSLHMT+QTAVLIET
Sbjct: 14  YKVKDMSQADFGRLEIELAEVEMPGLVSCVTEFGPSQPLKGARITGSLHMTIQTAVLIET 73

Query: 196 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDG 366
           L  LGAEV+W S NI+STQD AAAA+      ++AWKGET  EY WC E+ L +  G
Sbjct: 74  LTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPG 130


>At2g34360.1 68415.m04207 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 466

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = +1

Query: 136 GARIAGSLHMTVQTAVLIETLIELGAEVQWSSSN---IYSTQDEAAAAL 273
           GA++ G L + +Q A+L+ TL+ +   + W+++    ++  QD++ A L
Sbjct: 98  GAKMYGMLGIQMQRAMLVLTLLSVPLSIVWANTEHFLVFFGQDKSIAHL 146


>At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Since
           this genomic sequence region is unfinished, the
           annotated gene may be missing a stop codon or start
           codon
          Length = 487

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 229 SSNIYSTQDEAAAALVAVGIPIYAWKGETDDE 324
           SS++YS  D     +   GI  Y W+G  D++
Sbjct: 25  SSDLYSRSDFPEGFVFGAGISAYQWEGAVDED 56


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 340 QYTKYTRHQFLPSRHRWVFLRQPVQLRPRLVYY-KCYCWTIVPLLPILL 197
           QY  +     LPSRHR +  R+    R  L +  +   +T +PLLP+ L
Sbjct: 643 QYLHHRLRHILPSRHRHLLRRKHTIHRNHLHHNPRNLQFTALPLLPLYL 691


>At5g64860.1 68418.m08159 4-alpha-glucanotransferase, putative /
           disproportionating enzyme, putative similar to
           4-alpha-glucanotransferase SP:Q06801 from [Solanum
           tuberosum]
          Length = 576

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 283 GIPIYAWKGETDDEYIWCIEQ 345
           G P+Y WK    D+Y W + +
Sbjct: 339 GSPLYDWKAMESDQYSWWVNR 359


>At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein
           weak similarity to S-locus protein 4 (GI:6069478)
           [Brassica rapa]; weak similarity to Pre-mRNA cleavage
           complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913)
           [Homo sapiens]; contains Prosite PS00028: Zinc finger,
           C2H2 type, domain
          Length = 828

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 280 VGIPIYAWKGETDDEYIWCIEQTL 351
           +G+P  +WK   ++E++W +   L
Sbjct: 261 IGVPYDSWKNSEEEEFMWDMHSRL 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,561,882
Number of Sequences: 28952
Number of extensions: 169701
Number of successful extensions: 430
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)