Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0187
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    73   5e-14
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    58   1e-09
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    53   5e-08
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    28   1.5  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    26   4.7  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.7  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    26   6.2  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 72.5 bits (170), Expect = 5e-14
 Identities = 31/65 (47%), Positives = 44/65 (67%)
 Frame = +1

Query: 472 RKGDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVX 651
           + GD + MHYTGTL +G +FDSS+ RG+P    +G GQ+I+GWD+G+  M  GE+ KL  
Sbjct: 18  KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTI 77

Query: 652 STGIG 666
           +   G
Sbjct: 78  TPDYG 82


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 26/56 (46%), Positives = 36/56 (64%)
 Frame = +1

Query: 478 GDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKL 645
           G  + M Y G L++G  FD +  +G P  F LG G+VI+GWD G+ GM EG +RK+
Sbjct: 275 GKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKI 329


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 25/51 (49%), Positives = 32/51 (62%)
 Frame = +1

Query: 493 MHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKL 645
           M Y G L +G  FD +I  G P TF LG  +VIKGWD G++GM  G +R +
Sbjct: 281 MRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTI 330


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 304 NTDFLT*LHSLFNCYKTLLNTKMRFKSTLNVP 209
           +TD +  L  + NCY  + N K + +ST N P
Sbjct: 582 DTDSIDVLEDIDNCYSKVFNKKSKRESTSNEP 613


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = +1

Query: 544 PRGNPLTFKLGSGQVIKGWDQGLLGMC-----EGEQRKLVXSTGIGLWFSWS 684
           P+  PLT K     +++ W   + G+C      GE + +  +  +G W  WS
Sbjct: 242 PKKKPLTLK-AIKDIVRSWR--IYGLCILWIFSGETQAIAVNVLMGQWMKWS 290


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 638 VNLSXPPELAYGSAGAPPK 694
           V++S PP  A GSAG+ PK
Sbjct: 66  VDVSSPPSTAPGSAGSTPK 84


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 527 NLIVQF-LEVTP*PSNLVLVKLLRVGIKGYLECAKENNVNLS 649
           NL+ Q+ +E+    S LVL K LR+ ++  LE  K   ++ S
Sbjct: 21  NLLEQYEVEIARLKSQLVLEKKLRIQVEKELESVKTKQISSS 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,395
Number of Sequences: 5004
Number of extensions: 43906
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)