Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0187
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                       93   2e-19
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   9e-13
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)                31   0.71 
SB_11841| Best HMM Match : Ras (HMM E-Value=0)                         31   1.2  
SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)                   29   3.8  
SB_37969| Best HMM Match : COLFI (HMM E-Value=0.03)                    28   6.6  
SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 41/75 (54%), Positives = 53/75 (70%)
 Frame = +1

Query: 421 KLQIGIKKRPEDCSIKSRKGDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGW 600
           +L+I +  +PE C+ K+  GD L MHYTG L +G +FDSS+ RG    F LG G VI+GW
Sbjct: 26  ELKIEVVSKPEKCTRKTHVGDTLSMHYTGRLANGNKFDSSLDRGKTFDFTLGKGMVIQGW 85

Query: 601 DQGLLGMCEGEQRKL 645
           +QGLL MC GE+RKL
Sbjct: 86  EQGLLDMCIGEKRKL 100



 Score = 31.5 bits (68), Expect = 0.71
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 605 KGYLECAKENNVNLSXPPELAYGSAGAPPKIPKSATL 715
           +G L+        L+ PP LAYG  GA   IP  ATL
Sbjct: 87  QGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATL 123


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
 Frame = +1

Query: 403 ESTASKKLQIGIKKRPEDCSIKSRKGDLLHMHYTGTLDDGTEFDSSIP--RG-NPLTFKL 573
           E   + K+++     P DC  K++ GD + +HYTG + DG+ FD++    +G  P  F +
Sbjct: 93  EEDPNAKIEVEETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTI 152

Query: 574 GSGQVIKGWDQGLLGMCEGEQRKLV 648
           G G VIKG++QG+ GMC G++RK+V
Sbjct: 153 GGGTVIKGFEQGVTGMCVGQKRKIV 177


>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
          Length = 639

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +1

Query: 478 GDLLHMHYTGTLDD----GTEFDSSIPRGNPLTFKLGSGQVIKG 597
           GD + + YTG L +    G  FDS+        FK G G+VIKG
Sbjct: 122 GDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKG 165


>SB_11841| Best HMM Match : Ras (HMM E-Value=0)
          Length = 523

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 598 WDQGLLGMCEGEQRKLVXSTGIGLW 672
           W+Q  + + +G +R L+  TGIGLW
Sbjct: 34  WNQPNIWVLKGAERDLIIDTGIGLW 58


>SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)
          Length = 1332

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 424 LQIGIKKRPEDCSIKSRKGDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVI 591
           L   I   P   S+ SR+G ++    T T + G  F  ++  G+ L F +   QV+
Sbjct: 147 LSANISLVPNSVSVLSREGTVIGELRTKTANPGETFTYTLTNGDNLPFAIKDDQVV 202


>SB_37969| Best HMM Match : COLFI (HMM E-Value=0.03)
          Length = 405

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 718 SKSSRLWYLWWCSS*TISQFRW 653
           S + + WY WW S   + Q+ W
Sbjct: 310 SNTQKRWYAWWVSLDGVKQYTW 331


>SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 985

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -1

Query: 580 QNQV*RLRGYLEELNYQILYRHLKCQCSAYAKDLLCGS*WNSPQ 449
           Q+++  LRG ++ L++Q+LY   KC+  A     L G  + + Q
Sbjct: 713 QDEIAILRGQVQLLHHQLLYERHKCEQHAIRNRRLIGKTFKAVQ 756


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,552,652
Number of Sequences: 59808
Number of extensions: 308832
Number of successful extensions: 492
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)