Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0186
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   4.0  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    25   7.1  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   9.3  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   9.3  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 400 FFTRTYFYFVPELFILDKFQHELIFYLI 483
           FFT   F+ VP+  +  K    L+FYL+
Sbjct: 219 FFTVLSFFNVPDAIVYSKLCRGLMFYLL 246


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 3   NSRYYVRFDLVSCTSFCRRSLKFAVIEECAGLYLTNAHFVRTTVRMKSVTLRMH*RIGAG 182
           NSR  +R       S CR SLKF    +  G  L     +  ++ +  V +  H  +G+G
Sbjct: 177 NSRLLLRISTDDSNSLCRLSLKFGASLDDTGKLLD----IAKSLELNVVGVSFH--VGSG 230

Query: 183 VY 188
            Y
Sbjct: 231 SY 232


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +2

Query: 185 VLCPVLRAFRCPRCGAT---GDRAHTIKYCPE 271
           +LC  L A  CP CG+T    D A    YC +
Sbjct: 1   MLCFQLFAMGCPNCGSTTFESDTASGNTYCTQ 32


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 468 NFLFDRN*QIQFKTKLGIFNPLSRYLILQCLNFRFKLEEIVYTNIKNHIRERSKKSLTV 644
           N L  ++ + QF+    I   L  Y+I   LNF  +   I Y    NHI+  S  S  V
Sbjct: 549 NLLVRKDGRWQFREHR-ILKQLWPYIIAMILNFIVRSSFIFYCIFPNHIQHSSGISFFV 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,195
Number of Sequences: 5004
Number of extensions: 43583
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)