Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0186
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 31 1.0
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572... 30 1.8
01_06_1579 + 38402868-38402894,38403394-38403582,38403817-384039... 30 1.8
05_03_0099 + 8382050-8382484 29 4.2
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55... 28 7.3
06_02_0183 - 12705227-12705357,12705935-12706208,12706518-127070... 28 7.3
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692... 28 7.3
02_05_0849 + 32202610-32202880,32204234-32205711,32205993-322061... 28 7.3
12_02_0636 + 21433109-21433450,21433538-21434089 27 9.7
>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 372 KPVLFVPPITNEADGGTRRR--ADKLPERSELASEFSGQY 259
KP+L+VP TN+ TR + LP SE S +S QY
Sbjct: 988 KPILYVPSPTNDDGVPTREQEAGGSLPASSEAFSAWSAQY 1027
>04_01_0438 -
5723451-5723759,5723795-5723863,5724025-5724210,
5724297-5724558,5724662-5724960,5725040-5725453,
5725533-5725899,5726002-5726146,5726562-5727558
Length = 1015
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 206 AFRCPRCGATGDRAHTIKYCPEN 274
A R RC +R HT KYCP++
Sbjct: 301 AGRVKRCSKCDERGHTYKYCPKD 323
>01_06_1579 +
38402868-38402894,38403394-38403582,38403817-38403918,
38404005-38405963,38406050-38406105,38406332-38406368
Length = 789
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 195 RCCVLSAVRGAAPPVTALTQSNTAR 269
R C L G PP+ AL+QS TAR
Sbjct: 731 RFCTLVLQEGVVPPLVALSQSGTAR 755
>05_03_0099 + 8382050-8382484
Length = 144
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 77 DRRMRRALPNECAFCKNNGENEECYSS--HALKDWRGRVLCPVLRAFRCPRCGATGDR 244
++R+RR + C +C+ +G E+C+ S H +G C P G G R
Sbjct: 27 EKRVRRG--SRCTWCRGSGLEEDCFDSVQHCTAGMKGGGACTEDGREAAPALGRKGMR 82
>08_01_0077 +
546473-546512,546739-547013,547772-547885,548002-550245
Length = 890
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 195 RCCVLSAVRGAAPPVTALTQSNTAR 269
R C + GA PP+ AL+QS T R
Sbjct: 792 RFCSIVLQEGAVPPLVALSQSGTPR 816
>06_02_0183 -
12705227-12705357,12705935-12706208,12706518-12707003,
12707140-12707175
Length = 308
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 72 AVIEECAGLYLTNAHFVRTTVRMKS 146
A++EEC + TN HF+ T + +K+
Sbjct: 125 ALVEECGAVEGTNEHFIATEIFIKN 149
>05_05_0385 +
24566916-24567503,24568609-24568824,24568916-24569241,
24569906-24570338,24570769-24571281
Length = 691
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 186 YYVRCCVLSAVRGAAPPVTALTQSNTARRTLMLVPIVLEVCPRV 317
++V V+ V A P S TA T+MLV +LE P++
Sbjct: 188 FFVILPVMQVVVWVAAPAMIRAGSTTAVMTVMLVAFMLEYLPKI 231
>02_05_0849 +
32202610-32202880,32204234-32205711,32205993-32206143,
32206378-32206559
Length = 693
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 409 RTYFYFVPELFILDKFQHEL 468
RT YF+P LF++ +Q EL
Sbjct: 318 RTDMYFIPSLFLIPSYQDEL 337
>12_02_0636 + 21433109-21433450,21433538-21434089
Length = 297
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 72 AVIEECAGLYLTNAHFVRTTVRMK 143
A++EEC + TN HF+ T + +K
Sbjct: 243 ALVEECCAVEGTNEHFIATEIFIK 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,435,764
Number of Sequences: 37544
Number of extensions: 304368
Number of successful extensions: 839
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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