Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0186
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46970| Best HMM Match : zf-nanos (HMM E-Value=2.6e-35)              93   2e-19
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)            31   0.80 
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_44119| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             28   7.5  
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  
SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)                   27   9.9  

>SB_46970| Best HMM Match : zf-nanos (HMM E-Value=2.6e-35)
          Length = 216

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 38/70 (54%), Positives = 51/70 (72%)
 Frame = +2

Query: 65  KVRSDRRMRRALPNECAFCKNNGENEECYSSHALKDWRGRVLCPVLRAFRCPRCGATGDR 244
           K R +++ R A  N C FC+NNGE+++ YSSH LKD  G   CP+LRA+ CP C A+G +
Sbjct: 139 KNRENKKNRNA--NVCVFCRNNGESKKVYSSHVLKDAEGNTTCPILRAYTCPLCKASGSQ 196

Query: 245 AHTIKYCPEN 274
           +HTIKYCP+N
Sbjct: 197 SHTIKYCPKN 206


>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
          Length = 921

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 107 ECAFCKNNGENEECYSSHALKDWRGRVLCPVLRAFRCPRC 226
           EC  C      +ECY  H + +  G  +C   + +RC  C
Sbjct: 249 ECGSCNRIFAGDECYERHCVPNKEGNSICS--KYYRCKAC 286


>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2149

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -2

Query: 360  FVPPITNEADGGTRRRADKLPERSELASEFSGQYLIV*ARSPVAPHRGQRKARST 196
            F PP   ++DG T    +  P+ S  +++ SGQ+  V     + P+     A ST
Sbjct: 1745 FTPPPEFQSDGNTMGYTEVFPKVSPKSNDHSGQHSEVVPHPMITPYSSVDVASST 1799


>SB_44119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 242 GHRWRRTADSGKHAAPDIVHARANPSVHAKSNTLHSHR 129
           G+R  R++  G+H +    H R N   H   N +H H+
Sbjct: 232 GNRLMRSSRHGRHKSESATHPRINDIFH--DNNVHPHK 267


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 246 ARSPVAPHRGQRKARSTGHSTRP 178
           +RSP A HR +RK R T H   P
Sbjct: 796 SRSPWASHREERKRRHTPHEDSP 818


>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 281  HQSSPGSI*LCERGHRWRRTADSGKHAAPDIVHARANPSVHAKSNTLHSHR 129
            H+ +PG   +    HR RR A S +  A    H +A+ S   +     SHR
Sbjct: 1109 HRKAPGYQRVASSSHRERRVASSSQRVASG-SHPKASGSHRERRGASGSHR 1158


>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
          Length = 1197

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 38  LYEFLQEVAKVRSDRRMRRALPNECAFCKNNGEN 139
           LYE  Q V K+R +   RR   N+ +    NG N
Sbjct: 153 LYELFQVVFKLRQEAAQRRNAQNDVSQAVTNGPN 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,579,746
Number of Sequences: 59808
Number of extensions: 341284
Number of successful extensions: 1175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)