Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0186
         (646 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M72421-1|AAA28715.1|  401|Drosophila melanogaster nanos protein.       81   2e-15
AE014297-2634|AAF55641.1|  401|Drosophila melanogaster CG5637-PA...    81   2e-15
AE014296-155|ABC66121.2|  355|Drosophila melanogaster CG34057-PA...    28   9.4  
AE014296-154|ABC66120.1|  344|Drosophila melanogaster CG34057-PB...    28   9.4  

>M72421-1|AAA28715.1|  401|Drosophila melanogaster nanos protein.
          Length = 401

 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 32/60 (53%), Positives = 42/60 (70%)
 Frame = +2

Query: 92  RALPNECAFCKNNGENEECYSSHALKDWRGRVLCPVLRAFRCPRCGATGDRAHTIKYCPE 271
           + +   C FC+NN E E   +SH+++D   RVLCP LR + CP CGA+GD AHTIKYCP+
Sbjct: 313 KEISRHCVFCENNNEPEAVINSHSVRDNFNRVLCPKLRTYVCPICGASGDSAHTIKYCPK 372


>AE014297-2634|AAF55641.1|  401|Drosophila melanogaster CG5637-PA
           protein.
          Length = 401

 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 32/60 (53%), Positives = 42/60 (70%)
 Frame = +2

Query: 92  RALPNECAFCKNNGENEECYSSHALKDWRGRVLCPVLRAFRCPRCGATGDRAHTIKYCPE 271
           + +   C FC+NN E E   +SH+++D   RVLCP LR + CP CGA+GD AHTIKYCP+
Sbjct: 313 KEISRHCVFCENNNEPEAVINSHSVRDNFNRVLCPKLRTYVCPICGASGDSAHTIKYCPK 372


>AE014296-155|ABC66121.2|  355|Drosophila melanogaster CG34057-PA,
           isoform A protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 80  RRMRRALPNECAFCKNNGENEECYSSHALKD 172
           RR+     N    CK NGE+E+    H L+D
Sbjct: 214 RRLNLFALNSTTICKLNGESEDVQIGHCLQD 244


>AE014296-154|ABC66120.1|  344|Drosophila melanogaster CG34057-PB,
           isoform B protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 80  RRMRRALPNECAFCKNNGENEECYSSHALKD 172
           RR+     N    CK NGE+E+    H L+D
Sbjct: 203 RRLNLFALNSTTICKLNGESEDVQIGHCLQD 233


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,613,382
Number of Sequences: 53049
Number of extensions: 504690
Number of successful extensions: 1383
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)