Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0186
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46828-7|CAA86860.1|  311|Caenorhabditis elegans Hypothetical pr...    48   4e-06
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    36   0.019
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    36   0.019
Z81050-13|CAB02857.3|  448|Caenorhabditis elegans Hypothetical p...    30   1.2  
U88171-1|AAB42251.2|  630|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U58758-15|AAB93424.1|  259|Caenorhabditis elegans Nanos related ...    28   4.9  
U41105-7|AAA82402.2|  184|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical...    28   6.5  

>Z46828-7|CAA86860.1|  311|Caenorhabditis elegans Hypothetical
           protein R03D7.7 protein.
          Length = 311

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 22/38 (57%), Positives = 26/38 (68%)
 Frame = +2

Query: 149 YSSHALKDWRGRVLCPVLRAFRCPRCGATGDRAHTIKY 262
           +S H  K  RGRV+CP LR+  C  CGATGD AHT K+
Sbjct: 267 WSDHCSKK-RGRVVCPKLRSMVCGICGATGDNAHTTKH 303


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 110 CAFCKNNGENEECYSSHALKDWRGRVLCPVLRAFRCPRCGATGDRAHTIKYCPE 271
           C  C++     E  SSH ++   G + C  ++  +C  C ATG++ H    CP+
Sbjct: 700 CYRCEHYQLPAEEVSSHNIRKDNGDLWCEHMKKIKCGHCEATGEQGHHPLICPK 753


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 110 CAFCKNNGENEECYSSHALKDWRGRVLCPVLRAFRCPRCGATGDRAHTIKYCPE 271
           C  C++     E  SSH ++   G + C  ++  +C  C ATG++ H    CP+
Sbjct: 697 CYRCEHYQLPAEEVSSHNIRKDNGDLWCEHMKKIKCGHCEATGEQGHHPLICPK 750


>Z81050-13|CAB02857.3|  448|Caenorhabditis elegans Hypothetical
           protein C50B6.8 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 29  PSLLYEFLQEVAKVRSDRRMRRALPNECAFCKN--NGENEECYSSHALKDWRGRVLCPVL 202
           PS++ +     A+  S  R R   P+EC+ C    NG + +  S +  K +  R LC   
Sbjct: 23  PSIIQKEPNRTARSESPARQRHQRPSECSICGKTANGYHYDVPSCNGCKTFFRR-LCVSE 81

Query: 203 RAFRCPRCG 229
           ++F C   G
Sbjct: 82  KSFICKAGG 90


>U88171-1|AAB42251.2|  630|Caenorhabditis elegans Hypothetical
           protein F25F8.1 protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 12  YYVRFDLVSCTSFCRRSLKFAVIEECAGLYLTNAH 116
           Y  R   V   S   R  K AV + C G+Y+TN+H
Sbjct: 325 YLTRPICVEAFSTQSRPNKLAVTDSCGGVYITNSH 359


>U58758-15|AAB93424.1|  259|Caenorhabditis elegans Nanos related
           protein 2 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 215 CPRCGATGDRAHTIKYCP 268
           C  CGA G+  HT  YCP
Sbjct: 195 CKICGARGEMNHTETYCP 212


>U41105-7|AAA82402.2|  184|Caenorhabditis elegans Hypothetical
           protein T02G5.11 protein.
          Length = 184

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 215 CPRCGATGDRAHTIKYCP 268
           C  CGA G+  HT  YCP
Sbjct: 120 CKICGARGEMNHTETYCP 137


>AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical
            protein Y48G9A.1 protein.
          Length = 1725

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 168  RIGAGVYYVRCCVLSAVRGAAPPVTALTQSNTARRTLMLVPIVLEV 305
            R+ AG+Y  R  V   VR AA  V  +  SNT R    +  I+ E+
Sbjct: 948  RVLAGLYLTRSDVALVVRQAAGHVWKMVVSNTPRTLREVTKILFEM 993


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,117,984
Number of Sequences: 27780
Number of extensions: 255714
Number of successful extensions: 634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)