Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0186
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              97   1e-22
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.8  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 97.5 bits (232), Expect = 1e-22
 Identities = 39/64 (60%), Positives = 47/64 (73%)
 Frame = +2

Query: 80  RRMRRALPNECAFCKNNGENEECYSSHALKDWRGRVLCPVLRAFRCPRCGATGDRAHTIK 259
           ++ ++ LP EC FC+NNGE E  Y  H LKD  GRV CPVLRA+ CP CGA GD AHT+K
Sbjct: 30  KKNKKPLPTECVFCRNNGEEEAYYRKHLLKDADGRVSCPVLRAYTCPICGACGDIAHTVK 89

Query: 260 YCPE 271
           YCP+
Sbjct: 90  YCPK 93


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +1

Query: 280 C*FRSFWKFVRASSRATIGFIGYGRDEQNRLWTPDS 387
           C FR  W+  R S    I  +        R+W PD+
Sbjct: 87  CYFRQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDT 122


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 591 YTNIKNHIRERSKKS 635
           YT+I   IR RSKKS
Sbjct: 224 YTSILLEIRRRSKKS 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,850
Number of Sequences: 438
Number of extensions: 3055
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)