Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0186
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    30   1.5  
At1g76560.1 68414.m08909 CP12 domain-containing protein contains...    29   2.0  
At4g01740.1 68417.m00226 DC1 domain-containing protein similar t...    29   3.5  
At2g17770.1 68415.m02058 ABA-responsive element binding protein,...    28   4.6  
At5g06690.1 68418.m00756 thioredoxin family protein low similiar...    28   6.1  
At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family pr...    28   6.1  
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ...    28   6.1  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    27   8.1  
At2g23140.1 68415.m02763 armadillo/beta-catenin repeat family pr...    27   8.1  
At1g51405.1 68414.m05786 myosin-related low similarity to nonmus...    27   8.1  

>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 185 VLCPVLRAFRCPRCGATGDRA 247
           +L P LR+F C  CG +GDR+
Sbjct: 583 ILLPRLRSFTCNACGLSGDRS 603


>At1g76560.1 68414.m08909 CP12 domain-containing protein contains
           Pfam domain PF02672: CP12 domain
          Length = 134

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = +2

Query: 41  YEFLQEVAKVRSDRRMRRALPNEC---AFCKNNGENEEC 148
           ++ ++EV++ R+D R++  L N+    +FC+ N E +EC
Sbjct: 91  WDEVEEVSQARADLRIKLKLLNQDPLESFCQENPETDEC 129


>At4g01740.1 68417.m00226 DC1 domain-containing protein similar to
           T15B16.6 similar to A. thaliana CHP-rich hypothetical
           proteins encoded by T10M13, GenBank accession number
           AF001308
          Length = 652

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 188 LCPVLRAFRCPRCGATGDRA 247
           L P LR+F C  CG  GDR+
Sbjct: 221 LLPSLRSFLCSACGLNGDRS 240


>At2g17770.1 68415.m02058 ABA-responsive element binding protein,
           putative similar to ABA response element binding factor
           [Triticum aestivum] gi|21693583|gb|AAM75354
          Length = 156

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 53  QEVAKVRSDRRMRRALPNECAFCKNNGENEECYSSHA 163
           Q+    R DRR +R + N  +  ++    +EC S H+
Sbjct: 117 QDSDDTRGDRRYKRMIKNRESAARSRARKQECVSPHS 153


>At5g06690.1 68418.m00756 thioredoxin family protein low similiarity
           to SP|P34723 Thioredoxin {Penicillium chrysogenum};
           contains Pfam profile: PF00085 Thioredoxin
          Length = 210

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 98  LPNECAFCKNNGENEECYSSHALKDWR 178
           L  +C FC +   NE+   SH  K+WR
Sbjct: 56  LEKKCGFCVSVYSNEKLGRSHMEKEWR 82


>At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 760

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 201 CVLSAVRGAAPPVTALTQSNTAR 269
           C L    GA PP+ AL+QS T R
Sbjct: 713 CTLVLQEGAIPPLVALSQSGTQR 735


>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 536

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 592 YTISSNLNRKFKHCKIKYLLSGLNIPNLVLN*IC*FRSNKKLVHAET 452
           + ++SN  ++ +  ++ YLL  LN  + V+N    +R N +  H E+
Sbjct: 465 FKLTSNAEQEEQAERLSYLLDYLNTEDNVMNITTNYRDNDRRTHCES 511


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -1

Query: 376 SKACSVRPA---HNQ*SRWWHATTRGQTSRTIGTSIRVLRAVFDCVSAVTGG 230
           ++ACS   A   H+   R  H  T GQ+   I +SI+  +  FD V A   G
Sbjct: 828 AEACSSLRAILKHDTSRRLLHLLTPGQSLPNISSSIKYFKDAFDWVEAHNSG 879


>At2g23140.1 68415.m02763 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 811

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 195 RCCVLSAVRGAAPPVTALTQSNTAR 269
           R C +    GA PP+ AL+QS T R
Sbjct: 779 RFCNMVLQEGAVPPLVALSQSGTPR 803


>At1g51405.1 68414.m05786 myosin-related low similarity to nonmuscle
           myosin heavy chain from Gallus gallus [GI:212449],
           Xenopus laevis [GI:214624], Homo sapiens [GI:641958]
          Length = 487

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 318 RRADKL-PERSELASEFSGQYLIV*ARSPVAPHRGQRKARSTGHSTRPRQS 169
           R+ DKL PE+++L SE   + LI   +     + G     S G +T+P  S
Sbjct: 413 RKEDKLEPEKNKLPSESEKRVLICRLKENRHSNNGDWSKYSEGRTTKPSSS 463


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,204,412
Number of Sequences: 28952
Number of extensions: 231974
Number of successful extensions: 616
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)