Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0184
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.4  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   7.2  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   7.2  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -3

Query: 356 FIDKDQWFSTFFTLRWANIIFTLSRHPYLHATFMIIKVKVGTRYIY 219
           FI   +W+      +   I++     PY+  TF  IK++  T Y +
Sbjct: 171 FITNGEWYLIGMPGKKNTIVYACCPEPYVDVTF-TIKIRRRTLYYF 215


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -3

Query: 356 FIDKDQWFSTFFTLRWANIIFTLSRHPYLHATFMIIKVKVGTRYIY 219
           FI   +W+      +   I++     PY+  TF  IK++  T Y +
Sbjct: 171 FITNGEWYLIGMPGKKNTIVYACCPEPYVDVTF-TIKIRRRTLYYF 215


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -3

Query: 356 FIDKDQWFSTFFTLRWANIIFTLSRHPYLHATFMIIKVKVGTRYIY 219
           FI   +W+      +   I++     PY+  TF  IK++  T Y +
Sbjct: 171 FITNGEWYLIGMPGKKNTIVYACCPEPYVDVTF-TIKIRRRTLYYF 215


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -3

Query: 356 FIDKDQWFSTFFTLRWANIIFTLSRHPYLHATFMIIKVKVGTRYIY 219
           FI   +W+      +   I++     PY+  TF  IK++  T Y +
Sbjct: 171 FITNGEWYLIGMPGKKNTIVYACCPEPYVDVTF-TIKIRRRTLYYF 215


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -3

Query: 356 FIDKDQWFSTFFTLRWANIIFTLSRHPYLHATFMIIKVKVGTRYIY 219
           FI   +W+      +   I++     PY+  TF  IK++  T Y +
Sbjct: 171 FITNGEWYLIGMPGKKNTIVYACCPEPYVDVTF-TIKIRRRTLYYF 215


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
 Frame = +2

Query: 23   YYQC----RRKQYF**GGHMAFSRDLCSW 97
            YY+C     RKQY   G H    R +C W
Sbjct: 1118 YYRCVLGELRKQYCAGGLHWNKERKICDW 1146


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 443 IN*SQHTILNGDTIIVTRNRLSDELCNNTFIDKDQWFS 330
           IN  Q   +NG  II    R SD+   +      Q +S
Sbjct: 553 INRKQKVFINGTLIIENVERASDQATYDCVAKNSQGYS 590


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 344 LCQ*KCYCTIHLTACFGLLLLCHHL 418
           LC+ +C+ T +   C   LLL   +
Sbjct: 84  LCRSECFSTKYFVGCVESLLLSEEM 108


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 368 CNNTFIDKDQWFSTFFTLRWA 306
           C ++  + D     +FTL+WA
Sbjct: 254 CYDSGFNSDNLTDVYFTLQWA 274


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,816
Number of Sequences: 336
Number of extensions: 3709
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)