Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0184
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    30   0.27 
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    28   1.1  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    27   3.4  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    25   7.8  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   7.8  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.8  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   7.8  

>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 6   IGTRVVITNVVESNIFNKAVIWHSAGT 86
           +G R +I N++E +  N  ++W SAGT
Sbjct: 105 VGERGIIRNLIEQDRCNSMILWGSAGT 131


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 280 CRESVKIMLAHRRVKKVENHWSLSIKVLLHNSSDSLFRVTIIVSPF 417
           C+E + +++    V   ENH++LS    L N+S     + IIV+ F
Sbjct: 287 CQEEIDVVVF---VVNAENHFTLSATDFLRNASTEKSHIFIIVNKF 329


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 87  FVLGYCNRHVVLNDVKVNGFDCIYKCLLDVNCTTMFN 197
           F+LG  +  V + DV+      +Y+C   VNC  +F+
Sbjct: 233 FILGCNDGAVYVEDVQRTSPILVYRCSNAVNCVQLFD 269


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/55 (21%), Positives = 24/55 (43%)
 Frame = +3

Query: 24  ITNVVESNIFNKAVIWHSAGTFVLGYCNRHVVLNDVKVNGFDCIYKCLLDVNCTT 188
           IT + +  IFN  +    A  +++     H +   VK++ F+ +    +D    T
Sbjct: 205 ITTLYQPRIFNDFIALRDASNYMIRLSISHAIAQSVKISLFEELVNETIDATKDT 259


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 159 KCLLDVNCTTMFNISTMHKLINVPS 233
           KCL DV   + + IS + K +N+PS
Sbjct: 22  KCL-DVRAQSKYEISHLRKSVNIPS 45


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 600 LSRSREVIDLGCQLVNIFYLVPAVSGTFSS 511
           LS+  ++++  C+L +    +P++S  FSS
Sbjct: 708 LSKIYQILNAACELTDFAAQIPSISKAFSS 737


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 323 FTLRWANIIFTLSRHPYLHATF 258
           FT  +  I++  SR PYLHA +
Sbjct: 130 FTYGFLGILYGTSRTPYLHAQY 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,630
Number of Sequences: 5004
Number of extensions: 53374
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)