Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0184
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0213 + 28443724-28443775,28443901-28444007,28444757-284456...    31   0.86 
09_02_0187 - 5533728-5534225                                           29   3.5  
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706...    29   3.5  

>05_07_0213 +
           28443724-28443775,28443901-28444007,28444757-28445644,
           28445760-28445762,28446006-28446398
          Length = 480

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 105 NRHVVLNDVKVNGFDCIYKCLLDVNCTTMFNISTMHKL 218
           NRH  L  VK++GF C  K L+++ C  + N+ ++  L
Sbjct: 374 NRHDSLKTVKISGF-CSAKSLVELTCYILKNVVSLESL 410


>09_02_0187 - 5533728-5534225
          Length = 165

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
 Frame = +3

Query: 90  VLGYCNRH--------VVLNDVKVNGFDCIYKCLLDVNCTTMFNISTMHKLINVPS 233
           VL YC +H        V + D ++  FD  +   +DV+ T +FN+      +NVPS
Sbjct: 64  VLEYCKKHAAAAAAEDVAVKDQELKSFDASF---IDVDNTMLFNLILAANYLNVPS 116


>05_06_0206 +
           26369089-26369143,26369627-26369733,26369814-26370647,
           26370781-26370939,26371070-26371410,26373894-26373991,
           26374244-26374350,26374715-26375266,26375366-26375524,
           26375631-26376005
          Length = 928

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 105 NRHVVLNDVKVNGFDCIYKCLLDVNCTTMFNISTMHKL 218
           +RHV L +VK+ GF C  K ++++ C  + N +++  L
Sbjct: 409 HRHVNLKNVKIIGF-CSAKSMVELTCHIIENATSLESL 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,265,003
Number of Sequences: 37544
Number of extensions: 306324
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)