Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0184
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13158| Best HMM Match : PAN (HMM E-Value=9.4e-06)                   28   6.2  
SB_29950| Best HMM Match : A2M_comp (HMM E-Value=7.1)                  28   6.2  

>SB_13158| Best HMM Match : PAN (HMM E-Value=9.4e-06)
          Length = 329

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 108 RHVVLNDVKVNGFDCIYKCLLDVNCTTMFNISTMHKLINV 227
           RH +  +  V+  DC+  C+LD  C ++ N  T  K   +
Sbjct: 259 RHAIATEQNVSVVDCVMFCMLDGRCQSL-NYVTSSKTCEI 297


>SB_29950| Best HMM Match : A2M_comp (HMM E-Value=7.1)
          Length = 419

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 120 LNDVKVNGFDCIYKCLLDVNCTTMFNISTMHKLINVPSTYLHFNYHKCCM*VRVS 284
           L  + ++G  C+ +  + V   T F I   H+L ++ S  L  NY K C    VS
Sbjct: 228 LQQIVLSG-SCVARVSIPVEDLTEFLIYQKHRLDHLDSNRLRRNYDKTCPGTHVS 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,957,036
Number of Sequences: 59808
Number of extensions: 389270
Number of successful extensions: 841
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)