Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0184
         (688 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   3.9  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   3.9  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   5.2  
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    24   5.2  

>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 303 HNLYTFATPLLTC 265
           H LYTF  P+L+C
Sbjct: 933 HTLYTFNDPILSC 945


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 525  GTFSSTWLAYCCDELNTSCFNFFITQKYQLISTYYFKW*HNNSNPKQAV 379
            G  S ++L Y  D  + S  NF+ + +Y     YY      +  PK A+
Sbjct: 1310 GASSPSFLRYDSDCSSNSSANFYSSDEYDEEDDYYLY--DGSEKPKNAI 1356


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 398 VTRNRLSDELCNNTFIDKDQ 339
           VT+N+L + L NN F  KD+
Sbjct: 823 VTKNKLENLLTNNLFRRKDE 842


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 86  LCSWLL*PACCIKRC 130
           +C W+L   CC ++C
Sbjct: 32  VCVWMLCEVCCSRKC 46


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,959
Number of Sequences: 2352
Number of extensions: 13277
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)