Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0184
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.6  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   8.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.3  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 342 PVVLNLLYSAMG*HNL 295
           P+  NL YSA+  HNL
Sbjct: 258 PLTQNLYYSALSSHNL 273


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 66  IWHSAGTFVLGYCN 107
           +W   GT+V G+C+
Sbjct: 2   LWRMTGTWVGGFCH 15


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 119 YNMPVTITKNKGPG*MPYDRLIKNIAFYDIGNN 21
           Y+ P T+ K K      YD  ++ I+ + I NN
Sbjct: 38  YDHPTTLLKLKRYLFCEYDPNVRPISSHQIANN 70


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 330 NLLYSAMG*HNL 295
           NL YSAM  HNL
Sbjct: 261 NLYYSAMSSHNL 272


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +3

Query: 141 GFDCIYKCLLDVNCTT--MFNI 200
           GF C +   +DV C+T  +FN+
Sbjct: 256 GFVCDFYIAMDVTCSTSSIFNL 277


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 419  LNGDTIIVTRNRLSDELCNNTFI 351
            +NG+ I+V+RN+   ++  N  I
Sbjct: 1531 VNGEKIVVSRNKAYQKVEENEII 1553


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 129 HRLIQHAGYNNQE 91
           H+LI +AGY N +
Sbjct: 188 HQLISYAGYKNPD 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,801
Number of Sequences: 438
Number of extensions: 3576
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)