Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0183
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1516 + 30712208-30712780,30712984-30713139,30713819-307139...    31   1.2  
04_04_0419 + 25086456-25086768,25087302-25087369,25087458-250876...    30   2.0  
02_02_0054 - 6398829-6399047,6399470-6399676,6399858-6400557,640...    29   3.6  
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    28   8.3  

>06_03_1516 +
           30712208-30712780,30712984-30713139,30713819-30713985,
           30714108-30714357,30714400-30715182,30715437-30715753,
           30715775-30716036
          Length = 835

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +2

Query: 2   CRNRHEVK*WRTSQTSSLQSKHTVYPTSMCSKP*IYGRKKTSPK*SAHCLPSVVRLTDTR 181
           C N+ + + WR  + S   +K ++   ++  K  I  + + SP  S+  L SV  L  T 
Sbjct: 315 CWNKKKAQVWRPKKDSMPAAKKSIVERAVLGKEIICFKNQGSPSSSSQQLQSVPLLLSTS 374

Query: 182 NGAAP 196
           + +AP
Sbjct: 375 SPSAP 379


>04_04_0419 +
           25086456-25086768,25087302-25087369,25087458-25087681,
           25087929-25088012,25088593-25088806,25089252-25089428,
           25089526-25089645,25089865-25089991,25090104-25090130,
           25090526-25091007
          Length = 611

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 15  TRSNDGEHHKLPVCNQSIRCTRHRCVPNRRSMGEKRHRPSSQH 143
           T + +  HHKL    Q I   R R +   +S G+ R +   QH
Sbjct: 461 TVNGNNAHHKLYATMQDIAVRRRRAIVQGKSWGKTRSQERQQH 503


>02_02_0054 -
           6398829-6399047,6399470-6399676,6399858-6400557,
           6400927-6401120
          Length = 439

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 172 RHAEWSGPCLGPKPAD---ECKRDFSDEVLKAGQTVIGLQAGSNKG 300
           +++++ GPCL   P D    C++D++ +  +  +  +G   G+  G
Sbjct: 79  KNSKYKGPCLATNPIDRCWRCRKDWATDRKRLARCAMGFGRGATGG 124


>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 142 C*LLGRCLFSPIDLRFGT--HRCRVHRML 62
           C L+ R L  P+D+RF +    CRVH ++
Sbjct: 476 CELVNRSLVQPVDIRFDSKARACRVHDIM 504


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,809,547
Number of Sequences: 37544
Number of extensions: 401725
Number of successful extensions: 935
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)