Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0183
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 7e-13
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8) 48 6e-06
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05) 43 3e-04
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 39 0.003
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 34 0.097
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 33 0.30
SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 6.4
SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012) 28 8.4
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 71.3 bits (167), Expect = 7e-13
Identities = 46/118 (38%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Frame = +1
Query: 4 QESARGQMMENITNFQSAIKA-YGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYRHA 180
Q+ + MENI NF S I+ GV D+FQTVDL+EK ++ V+ + A+GR Y
Sbjct: 483 QQKMPFKQMENIGNFLSFIENNLGVAKNDLFQTVDLYEKSNMWNVICCIHAVGRRAYSLG 542
Query: 181 EWSGPCLGPKPADECKRDFSDEVLKAGQTVI-GLQAG--SNKGATQSGQNLGAGRKIL 345
+ P LGPK + + R F++ L G+T+I Q G + AT SGQ+ G R+I+
Sbjct: 543 K-DVPQLGPKESTKNPRQFTERQLNEGKTIINSFQMGPAAKNVATASGQSFGRQRQII 599
>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/81 (40%), Positives = 50/81 (61%)
Frame = +1
Query: 22 QMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYRHAEWSGPCL 201
+MMEN F GVP D+FQTVDL+EK+++ V++ + ALGR+ + + + L
Sbjct: 125 KMMENTGKFLEFCDTIGVPKTDMFQTVDLYEKQNMPGVINGIHALGRKAHSTGK-TCLAL 183
Query: 202 GPKPADECKRDFSDEVLKAGQ 264
GPK A R+F++E +AGQ
Sbjct: 184 GPKEASANPREFTEEQRRAGQ 204
>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
Length = 89
Score = 48.4 bits (110), Expect = 6e-06
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = +1
Query: 28 MENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYRHAEWSGPCLGP 207
MENI NF ++ GV +D+FQTVDL+EK+++A R + P LGP
Sbjct: 18 MENIGNFLLFCESLGVSKVDLFQTVDLYEKQNMAAA------------RAKGLNCPQLGP 65
Query: 208 KPADECKRDFSDEVLKAGQTV 270
K A+ R F ++ L+AG+ +
Sbjct: 66 KEAEANPRSFDEDKLRAGKGI 86
>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
Length = 195
Score = 42.7 bits (96), Expect = 3e-04
Identities = 30/84 (35%), Positives = 43/84 (51%)
Frame = +1
Query: 22 QMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYRHAEWSGPCL 201
+ MENI NF S GV D FQT DL+ D A + S + P L
Sbjct: 83 KQMENIGNFLSHCGHLGVASGDQFQTADLY---DNANMTSCQLIKDLDI--------PTL 131
Query: 202 GPKPADECKRDFSDEVLKAGQTVI 273
GPK A+ R+F++E L+AG++++
Sbjct: 132 GPKEAEANVREFTEEQLRAGESIL 155
>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +1
Query: 22 QMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDI 126
+MMENI F + IK+YGV + +F TVDL+EK+++
Sbjct: 209 KMMENIGWFVNFIKSYGVQEEYIFVTVDLYEKRNV 243
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +1
Query: 25 MMENITNFQSAIKA--YGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYRH 177
M ENI NF +A + + D+FQTV L+E++++ QV+S + A R+ +H
Sbjct: 897 MQENIANFLNACQEEPFNCNPQDLFQTVYLFERQNLGQVISGIQAFARKVRKH 949
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +1
Query: 7 ESARGQMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQV 135
E G+ M I F +GV D+FQTVDL+EK++I QV
Sbjct: 693 EKVLGEEMVTIAKFLDFCGTFGVAKSDLFQTVDLYEKQNIQQV 735
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 34.3 bits (75), Expect = 0.097
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 25 MMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQV 135
MMENI NF + ++ GV F T+DL+E K++ QV
Sbjct: 124 MMENIENFCNFVQTKGVASQYQFVTIDLFEGKNMHQV 160
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 31 ENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYR 174
+N++NF + VPD+ +F+T DL K+ V+ TL + R+ ++
Sbjct: 108 DNVSNFIRWCRELRVPDVIMFETEDLVLNKNEKTVLLTLLEVARKAFK 155
>SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +1
Query: 193 PCLGPKPADECKRDFSDEVLKAGQTVI 273
P LGPK A+ R+F++E L+AG++++
Sbjct: 10 PTLGPKEAEANVREFTEEQLRAGESIL 36
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 25 MMENITNFQSAI-KAYGVPDIDVFQTVDLWEKKDIAQV 135
M ENI+ F + G+ +++FQTVDL+E++++ V
Sbjct: 339 MQENISKFLDFCERVLGLDRLNLFQTVDLFERQNVGMV 376
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 22 QMMENITNFQSAIKA--YGVPDIDVFQTVDLWEKKDIAQV 135
Q++ENI F A + + +D+F DL+EK ++ QV
Sbjct: 227 QILENIEKFLKACQGEPFNCNVVDLFSPGDLYEKNNVGQV 266
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/44 (22%), Positives = 21/44 (47%)
Frame = -2
Query: 392 LKINITLCWCCVHLPIKILRPAPRFCPD*VAPLLDPACRPITVC 261
+++ + +C+ CVHL +++ P C + P C + C
Sbjct: 1039 VRVCLPVCFSCVHLSVRVCLPVCFSCVHLSVRVCSPVCSRVFTC 1082
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/55 (23%), Positives = 21/55 (38%)
Frame = -2
Query: 425 VHYHTNLYKIILKINITLCWCCVHLPIKILRPAPRFCPD*VAPLLDPACRPITVC 261
VH + + T + CVHL +++ P C +L P C + C
Sbjct: 1102 VHLSVRVLSPVCSRVFTCLYACVHLSVRVCLPVCFSCVHLSVRVLSPVCPRVFTC 1156
>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 199 LGPKPADECKRDFSDEVLKAGQTVIG 276
LGP P+D+ RDF L++GQ V G
Sbjct: 233 LGPDPSDKKVRDFIWNTLQSGQVVPG 258
>SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 356
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -2
Query: 191 PLHSACL*VSRPRANSVLTTWAMSFFSHRSTVWNTSMSGTPYALIADW 48
PLH+ L SR R + TW ++FF+ ++ ++ + DW
Sbjct: 134 PLHAGTLITSRRRYFLIAATWVIAFFNASPLLYTMTLDNNNLCQL-DW 180
>SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)
Length = 558
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 152 PSVVRLTDTRNGAAPASDPSPLTNANVTFLMKS*RPGK 265
PS +R+ D + P + P+T V + S +PGK
Sbjct: 20 PSTIRILDVCSNTTPCRELRPVTEGQVLKELHSLKPGK 57
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 152 PSVVRLTDTRNGAAPASDPSPLTNANVTFLMKS*RPGK 265
PS +R+ D + P + P+T V + S +PGK
Sbjct: 467 PSTIRILDVCSNTTPCRELRPVTEGQVLKELHSLKPGK 504
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,168,401
Number of Sequences: 59808
Number of extensions: 478381
Number of successful extensions: 1096
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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