Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0183
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67910.1 68414.m07755 expressed protein 29 2.3
At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-... 29 3.0
At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-... 29 3.0
At1g63350.1 68414.m07161 disease resistance protein (CC-NBS-LRR ... 28 5.2
At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger) fa... 28 6.9
At3g18930.2 68416.m02403 zinc finger (C3HC4-type RING finger) fa... 28 6.9
At3g18930.1 68416.m02402 zinc finger (C3HC4-type RING finger) fa... 28 6.9
At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent phos... 28 6.9
At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent phos... 28 6.9
At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent phos... 28 6.9
At4g09700.1 68417.m01594 hypothetical protein similar to zinc fi... 27 9.1
At1g01220.1 68414.m00036 GHMP kinase-related contains similarity... 27 9.1
>At1g67910.1 68414.m07755 expressed protein
Length = 91
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 124 CLFSPIDLRFGTHRCRVHRML*LQ-TGSL*CSPSFDLVPIPA 2
CL SP G+ RCR+HR L LQ T S+ + D P PA
Sbjct: 44 CLCSPTT-HPGSFRCRIHRSLSLQRTKSIEAASLLDSPPKPA 84
>At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-1,
Zea mays, EMBL:X58573
Length = 235
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 169 YRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKG 300
Y + GP L P+ D KR+F DE+LK T + S KG
Sbjct: 99 YLDNTFEGPSLYPE--DHAKREFGDELLKYTDTFVKTMYVSLKG 140
>At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-1
[Zea mays] EMBL:X58573
Length = 237
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 169 YRHAEWSGPCLGPKPADECKRDFSDEVLK-AGQTVIGLQAGSNKG 300
Y + + GP L P+ D KR+F +E+LK +T + GS KG
Sbjct: 101 YVDSNFDGPSLYPE--DSAKREFGEELLKYVDETFVKTVFGSFKG 143
>At1g63350.1 68414.m07161 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 898
Score = 28.3 bits (60), Expect = 5.2
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Frame = -1
Query: 270 HSLPGLQDFIRKVTFAFV---SGLGSEAGAAPFRVSVSLTTEGKQCADYLGDVFFLP*IY 100
H GLQ+ ++K+ ++ S LGS G + L G + Y D+ + +
Sbjct: 599 HLPKGLQE-LKKLIHLYLERTSQLGSMVGISCLHNLKVLKLSG---SSYAWDLDTVKELE 654
Query: 99 GLEHIDVGYTVCFDCRLEVCDVL--HHLTSC-RFLQ 1
LEH++V T DC L L H L SC RFL+
Sbjct: 655 ALEHLEVLTTTIDDCTLGTDQFLSSHRLMSCIRFLK 690
>At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518 and a IBR domain,
Pfam:PF01485
Length = 316
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -2
Query: 323 RFCPD*VAPLLDPA---CRPITVCPAFRTSSEKSRLHSSAGLGPRQ 195
RFC D + D A +P+ CP+F +SE R L P+Q
Sbjct: 178 RFCFDCIKKQADVALEFAKPVVNCPSFGCNSELQREDCEGVLKPKQ 223
>At3g18930.2 68416.m02403 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 411
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 136 LLGRCLFSPIDLRFGTHRCRVHRML*LQTGSL*CSPSFDL 17
L+ R SP+ RF RCR R+L L + S + S DL
Sbjct: 61 LISRRFLSPLFRRFRRWRCRRRRLLHLSSASSASTSSSDL 100
>At3g18930.1 68416.m02402 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 411
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 136 LLGRCLFSPIDLRFGTHRCRVHRML*LQTGSL*CSPSFDL 17
L+ R SP+ RF RCR R+L L + S + S DL
Sbjct: 61 LISRRFLSPLFRRFRRWRCRRRRLLHLSSASSASTSSSDL 100
>At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 560
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +1
Query: 205 PKPADECKRDFSDE---VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 336
P PA + +D + ++KA T +GL + + G ++ G N LGAGR
Sbjct: 46 PTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 93
>At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 560
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +1
Query: 205 PKPADECKRDFSDE---VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 336
P PA + +D + ++KA T +GL + + G ++ G N LGAGR
Sbjct: 46 PTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 93
>At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 557
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 205 PKPA-DECKRDFSDE--VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 336
P PA D K D ++KA T +GL + + G ++ G N LGAGR
Sbjct: 44 PTPAMDSLKHGAPDTWTLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 91
>At4g09700.1 68417.m01594 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 371
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 3 AGIGTRSNDGEHHKLPVCNQSIRCTRHRCVPNRRSMGEKRHRPSSQ 140
+G +D H + C++ I+ + H V RRS +H PSS+
Sbjct: 327 SGFDLHPHDRSHPRRIACDEEIQSSSHNLVSGRRS----QHLPSSR 368
>At1g01220.1 68414.m00036 GHMP kinase-related contains similarity to
L-fucose kinase [Homo sapiens] gi|21212956|emb|CAD29647
Length = 1055
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 5 RNRHEVK*WRTSQTSSLQSKH-TVYPTSMCS 94
RN+ ++K WR+SQ SL+ H ++ MC+
Sbjct: 546 RNKEKIKLWRSSQRVSLEELHGSINFPEMCN 576
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,095,077
Number of Sequences: 28952
Number of extensions: 316853
Number of successful extensions: 716
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -