Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0182
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.6  
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   7.8  

>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 358 SIYNNYIL*LAKFFYSSFMLRNK*FIPVQLQEPFPYTL 245
           +I +N  + LA F  S F+L  K  I + L E  PYTL
Sbjct: 157 NILDNQKMLLAFFKASKFLLSEKGVIVITLAETKPYTL 194


>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 134 IFSLVLILQFSVNVLQYQPIVLYELCYCLTIFCR 235
           I+ LV I  F++++L  +P  L+  CY L++ CR
Sbjct: 160 IYDLV-ICSFALHLLT-EPSKLFSTCYALSVQCR 191


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 85   SKVLDCVVISGRVGIAYFFSCVNTAIFC 168
            S++ D +V +GR  ++Y    +NT  FC
Sbjct: 1084 SEIADTIVETGREILSYSLEYINTLDFC 1111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,967
Number of Sequences: 5004
Number of extensions: 59363
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)