Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0182
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33698| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)             29   3.6  
SB_55243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_43098| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)          28   6.3  
SB_13520| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_33698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -1

Query: 57 LTTLTIYRPRADSCSPGDP 1
          +T +T  RPR++SCSPGDP
Sbjct: 13 ITRVTNSRPRSNSCSPGDP 31


>SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)
          Length = 134

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/40 (27%), Positives = 27/40 (67%)
 Frame = -3

Query: 460 LIVYIYYRHPASATINIL*VAQRNYQEHISSILCSIYNNY 341
           +I+ I++ HP+S++I I+ +   ++    SSI+  I++++
Sbjct: 50  IIIIIHHHHPSSSSIIIIIIHHHHHPSSSSSIIIIIHHHH 89


>SB_55243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -1

Query: 36 RPRADSCSPGDP 1
          RPR++SCSPGDP
Sbjct: 15 RPRSNSCSPGDP 26


>SB_43098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 72  SHLRLLTTLTIYRPRADSCSPGDP 1
           +++R L T+   +P ++SCSPGDP
Sbjct: 50  TYVRGLETILEVQPLSNSCSPGDP 73


>SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)
          Length = 727

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 42 IYRPRADSCSPGDP 1
          I++P ++SCSPGDP
Sbjct: 43 IFKPTSNSCSPGDP 56


>SB_13520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 66 LRLLTTLTIYRPRADSCSPGDP 1
          LR+     I R R++SCSPGDP
Sbjct: 19 LRVRLRYRICRERSNSCSPGDP 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,662,909
Number of Sequences: 59808
Number of extensions: 440529
Number of successful extensions: 1672
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1672
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)