Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0182
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74039-1|CAA98503.1|  451|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U39997-2|AAK68388.1|  378|Caenorhabditis elegans Dehydrogenases,...    28   5.5  

>Z74039-1|CAA98503.1|  451|Caenorhabditis elegans Hypothetical
           protein K03B8.1 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 180 CKTFTENCSINTREKICDPNPTTDY 106
           C TF ENC+I+TR K  D      Y
Sbjct: 127 CVTFEENCTISTRIKFVDSTFCASY 151


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 359 AQYRTNVFLVIALSHS*NVDGCRRRVPIIYVNYKIYTFFYLLLRLVDEFTAHLVLSGY 532
           A Y  NV  +I LSH+ ++D C+  +P     Y + T + +L R+ D     +V+  Y
Sbjct: 469 ADYYDNVHRII-LSHTKDLDHCKIVIPSFPDYYDLSTRYEVLHRVEDILHEPIVIEEY 525


>U39997-2|AAK68388.1|  378|Caenorhabditis elegans Dehydrogenases,
           short chain protein5 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 434 VPIIYVNYKIYTFFYLLLRLVDEFT 508
           +P++YV Y++Y  F+  L+ +  +T
Sbjct: 49  IPVVYVGYRLYRTFFAFLKAIFIYT 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,195,628
Number of Sequences: 27780
Number of extensions: 342293
Number of successful extensions: 600
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)