Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0182
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.6  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   8.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.5  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 40  IQASCRFLQPGGS 2
           I A C FL PGGS
Sbjct: 64  IYAKCEFLNPGGS 76


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 332 ISQVFLFFIYVKKQVIYTGSTSRAVSL 252
           IS   LFFIYV+    ++   ++ VS+
Sbjct: 128 ISYGTLFFIYVQPSATFSLDLNKVVSV 154


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 311 FIYVKKQVIYTGSTSRAVSLHPV*KFDKISLDNN 210
           F Y K+ VIY  +++R V++    K  +  L  N
Sbjct: 151 FGYTKRDVIYKWNSARQVAIAEDMKLSQFDLVAN 184


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 630 FEGWGNRCNYTETLEFISQGGC 565
           ++ WGN  N    +E   + GC
Sbjct: 915 YDIWGNTVNVASRMESTGKVGC 936


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,264
Number of Sequences: 438
Number of extensions: 4541
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)