Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0180
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    28   0.99 
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    28   0.99 
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   1.3  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    27   2.3  
SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|...    27   2.3  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   2.3  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   2.3  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    27   2.3  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   3.0  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    25   5.3  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    25   7.0  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    25   7.0  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 8/31 (25%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +1

Query: 355 CTGITGMCYFQYTWRL-PLYGSVAAIILLGV 444
           CTG+TG+C+  +++ + P+   ++ ++L+ +
Sbjct: 128 CTGLTGLCFATFSYEVSPVVSVLSGVLLISL 158


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 381 LPVHMATSAVWFGSCYYTVRSGVDVISILESLGVT 485
           LPV      V++ + Y+ ++ G   + +L SLG T
Sbjct: 220 LPVQFGVGRVYYSAAYHALKRGTANMDVLVSLGST 254


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 263 SDETMYFNERSRETQAGRREKSWFDPEI*RNVQG 364
           SD    F+ + R T+ G+R  + F   I  N+QG
Sbjct: 271 SDSQQSFHHKGRNTRKGQRHNNGFYRNIANNIQG 304


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 192 SSKVCCHHNFVNRPLLDFQQVSFSVTRPCTSMN 290
           S K+    N +NRP+LD    SFS +R   S N
Sbjct: 175 SPKLGSPFNHINRPVLDRSPSSFSQSRSAVSGN 207


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 162 IGKNYPIRILSSKVCCHHNFVNRPLLDFQQVSFSVTRPCTSMNDQEKPKREEEKK 326
           +G   PI  + SK+  H    + P    ++VSFS+T    + +D+   K    +K
Sbjct: 53  LGNTSPIINVESKIPFHRRANSTPEESRKRVSFSLTSNDGAKSDRSSQKSSNSRK 107


>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 222

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 312 PAWVSLDRSLKYMVSSLKSLLAGNPVMAYSQNCDGNKLYLKEFE 181
           P+ +S+      M  S+K+   G P+  + +  DGN ++  EF+
Sbjct: 178 PSTLSISIPYTKMSFSIKNYYNGQPLRYFCKTRDGNVIFAVEFD 221


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 382 FQYTWRLPLYGSVAAIILLGVGWTSLV 462
           +Q  W+  L   +  +ILLGVGW+ L+
Sbjct: 291 WQKLWKAVLEVDLFGLILLGVGWSILL 317


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 279 TSMNDQEKPKREEEKKVGLIQRFKEMYRDYWYVLLPVHMATSA 407
           +++ D+       E KV  ++   ++YRD W+ LL VH   SA
Sbjct: 187 SNVRDERLYHSFRENKVKFLR--PDLYRDEWFNLLTVHQNHSA 227


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 230 PIHKIVMATNFT*KNSNGVIFAYIPFYRFN*VSN 129
           P H+++M      KNS+G++ +Y    + N ++N
Sbjct: 360 PSHRLLMLVALMMKNSSGILHSYAVLKKANAITN 393


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 240 DFQQVSFSVTRPCTSMNDQEKPKREEEKKVGLIQRFKEMYR--DYWYVLLP 386
           D QQ +++     T    Q+KP R E +++  +Q+F   Y+   Y Y + P
Sbjct: 412 DSQQAAYAAVCGKTRSPHQKKPLRVEFRQLRPMQQFSPQYQYPSYPYPMFP 462


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 327 LFSLLPAWVSLDRSLKYMVSSLKSLL 250
           LF +  AW S D  +  +V SLKS+L
Sbjct: 10  LFGVCLAWTSSDLEIFRVVDSLKSIL 35


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 461 TNDVHPTPNSIIAATEPYSGSRHVYW 384
           +N V PTP  I+  TE     +  +W
Sbjct: 76  SNSVAPTPGGILQETEKIPSKKVAFW 101


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 89  PLYEILSNYLNILFS*KSNFKL 24
           PLYE   ++L+  F  KSNF +
Sbjct: 268 PLYEYFKSFLDDFFGKKSNFHI 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,231
Number of Sequences: 5004
Number of extensions: 45530
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)