Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0180
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0129 - 21028528-21028575,21029559-21029654,21029989-210300... 34 0.081
04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706 33 0.14
06_01_0335 + 2412766-2415655,2416108-2416208,2416871-2416895,241... 28 5.3
10_08_0402 - 17631077-17631445,17634204-17634473 27 9.3
09_04_0305 - 16516481-16516638,16517135-16517274,16519196-16520148 27 9.3
07_03_0426 + 18075192-18075375,18075733-18076040 27 9.3
06_01_1192 + 10249316-10249431,10251263-10251279,10251890-102537... 27 9.3
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 27 9.3
01_06_1113 + 34613668-34614075,34614781-34614970,34615264-346153... 27 9.3
>09_06_0129 -
21028528-21028575,21029559-21029654,21029989-21030070,
21030394-21030472,21030946-21031042,21031506-21031593,
21033326-21033687
Length = 283
Score = 33.9 bits (74), Expect = 0.081
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 342 RFKEMYRDYWYVLLPVHMATSAVWFGSCYYTVRSGVDVISILESLGVT 485
R KE+ R Y V + VH++ S Y + + VDV +I +G++
Sbjct: 6 RMKELMRKYGKVAIGVHLSVSCASITGLYVAIDNNVDVDAIFRRIGIS 53
>04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706
Length = 187
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +3
Query: 288 NDQEKPKREEEKKVGLIQRFKEMYRDYWYVLLPVHMATSAVWFGSCYYTVRSGVDVISIL 467
+ +E + E + + ++ KE+ Y L + S + F CY V +GVDV +L
Sbjct: 74 SSKEGEEEEGKTRKSRTEQAKELLAKYGGAYLATSITLSLISFTLCYLLVSAGVDVQDLL 133
Query: 468 ESLGV 482
+G+
Sbjct: 134 GKVGI 138
>06_01_0335 +
2412766-2415655,2416108-2416208,2416871-2416895,
2416977-2417049,2417191-2417373,2418164-2418227,
2418427-2418447,2418862-2418905,2420575-2420650,
2421359-2421373
Length = 1163
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 387 VHMATSAVWFGSCYYTVRSGVDVISILESLGVTE---TLLKPLKESG 518
+HMA S WF +C V + + L+ LG + T K +KE G
Sbjct: 668 LHMACSTRWFSTCGVRVPMRIGNLKQLQELGYVDIRLTSSKAVKELG 714
>10_08_0402 - 17631077-17631445,17634204-17634473
Length = 212
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 458 NDVHPTPNSIIAATEPYSGSRHVYW 384
++V P P SI+ +PY+ + H +W
Sbjct: 59 DEVWPPPASILPRDDPYAAAIHRFW 83
>09_04_0305 - 16516481-16516638,16517135-16517274,16519196-16520148
Length = 416
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 327 VGLIQRFKEMYRDYWYVLLPVHMATSAVWFGSCYYTVRSGVDVI 458
V L++ +++ W+V++ V + T A+ C+ + G DV+
Sbjct: 178 VSLVRSASLVFQGVWFVVMGVMLWTPALIPKGCFLNLEEGHDVV 221
>07_03_0426 + 18075192-18075375,18075733-18076040
Length = 163
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 421 LPNHTAEVAMCTGSNTYQ*SLYISLNLWIKPT 326
+PN + ++ C GS + + + ++L W PT
Sbjct: 99 IPNRGSAISQCDGSESRRLRIVLTLTTWSHPT 130
>06_01_1192 +
10249316-10249431,10251263-10251279,10251890-10253797,
10253880-10254492,10255390-10255392,10257635-10257713,
10258177-10258236,10258536-10258586,10258800-10258948,
10260937-10260985
Length = 1014
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 387 VHMATSAVWFGSCYYTVRSGVDV---ISILESLGVTETLLKPLKESG 518
+HMAT + W+ S V G+ + +LE + + T + +KE G
Sbjct: 615 LHMATKSCWYKSFGVKVPKGIGKLRDLQVLEYVDIRRTSSRAIKELG 661
>05_06_0132 + 25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -2
Query: 227 IHKIVMATNFT*KNSNGVIFAYIPFYRFN*VSNIITI 117
IH + +FT N NG AYIPFYR N + I
Sbjct: 1105 IHGAMAGYSFTVGNVNGR-HAYIPFYRVTSTRNKVKI 1140
>01_06_1113 +
34613668-34614075,34614781-34614970,34615264-34615372,
34615822-34615912,34615948-34616076,34616306-34616804,
34617154-34617251
Length = 507
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +3
Query: 168 KNYPIRI----LSSKVCCHHNFVNRPLLDFQQVSFSVTRPCTSMNDQEKPKREEEKKVGL 335
KNYP + S+ +C H D S +RP D+E R +E K +
Sbjct: 256 KNYPTSVNINKASATLCPHQTIREASSTDHLMQKLSESRPDGEKKDEEAQMRRQELK-EV 314
Query: 336 IQRFKEM 356
+++ KE+
Sbjct: 315 LEKQKEL 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,137,468
Number of Sequences: 37544
Number of extensions: 256344
Number of successful extensions: 659
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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