Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0180
         (528 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK055618-1|BAB70973.1|  272|Homo sapiens protein ( Homo sapiens ...    79   1e-14
BC105604-1|AAI05605.1|  196|Homo sapiens SR140 protein protein.        29   7.6  
BC016323-1|AAH16323.1|  202|Homo sapiens Unknown (protein for IM...    29   7.6  
BC006474-1|AAH06474.1| 1027|Homo sapiens Unknown (protein for IM...    29   7.6  
AB002330-1|BAA20790.1| 1028|Homo sapiens KIAA0332 protein.             29   7.6  

>AK055618-1|BAB70973.1|  272|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31056 fis, clone HSYRA2000760. ).
          Length = 272

 Score = 79.0 bits (186), Expect = 1e-14
 Identities = 36/96 (37%), Positives = 59/96 (61%)
 Frame = +3

Query: 237 LDFQQVSFSVTRPCTSMNDQEKPKREEEKKVGLIQRFKEMYRDYWYVLLPVHMATSAVWF 416
           + F++V  S      +   +E+P   ++K + L QRFK+ +R Y  VL+PVH+ TS VWF
Sbjct: 90  VSFRRVFSSSATAQGTPEKKEEPDPLQDKSISLYQRFKKTFRQYGKVLIPVHLITSGVWF 149

Query: 417 GSCYYTVRSGVDVISILESLGVTETLLKPLKESGAG 524
           G+ YY    GV+V+  LE +G+ ++++  LK S +G
Sbjct: 150 GTFYYAALKGVNVVPFLELIGLPDSVVSILKNSQSG 185


>BC105604-1|AAI05605.1|  196|Homo sapiens SR140 protein protein.
          Length = 196

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 213 HNFVNRPLLDFQQVSFSVTRPCTSMNDQEKPKREEEKKVGLIQRFKEMYRDY 368
           H  ++RPLL+ +  +FS+ +  T+     K ++EE KK    +   E+Y ++
Sbjct: 69  HQNLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEF 120


>BC016323-1|AAH16323.1|  202|Homo sapiens Unknown (protein for
           IMAGE:4092985) protein.
          Length = 202

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 213 HNFVNRPLLDFQQVSFSVTRPCTSMNDQEKPKREEEKKVGLIQRFKEMYRDY 368
           H  ++RPLL+ +  +FS+ +  T+     K ++EE KK    +   E+Y ++
Sbjct: 69  HQNLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEF 120


>BC006474-1|AAH06474.1| 1027|Homo sapiens Unknown (protein for
           IMAGE:2820942) protein.
          Length = 1027

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 213 HNFVNRPLLDFQQVSFSVTRPCTSMNDQEKPKREEEKKVGLIQRFKEMYRDY 368
           H  ++RPLL+ +  +FS+ +  T+     K ++EE KK    +   E+Y ++
Sbjct: 68  HQNLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEF 119


>AB002330-1|BAA20790.1| 1028|Homo sapiens KIAA0332 protein.
          Length = 1028

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 213 HNFVNRPLLDFQQVSFSVTRPCTSMNDQEKPKREEEKKVGLIQRFKEMYRDY 368
           H  ++RPLL+ +  +FS+ +  T+     K ++EE KK    +   E+Y ++
Sbjct: 68  HQNLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEF 119


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,176,894
Number of Sequences: 237096
Number of extensions: 1524005
Number of successful extensions: 2912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2912
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5103531180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)