Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0180
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-20|CAB60503.2|  263|Caenorhabditis elegans Hypothetical...    62   2e-10
Z19154-5|CAA79557.1|  162|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF166167-1|AAD49856.1|  732|Caenorhabditis elegans adducin-relat...    29   2.7  
AF039043-5|AAK70639.1|  732|Caenorhabditis elegans Adducin prote...    29   2.7  
AF039043-4|AAL32219.1|  702|Caenorhabditis elegans Adducin prote...    29   2.7  
AF039043-3|AAM54181.1|  682|Caenorhabditis elegans Adducin prote...    29   2.7  
U23159-1|AAA85857.1| 1005|Caenorhabditis elegans bifunctional gl...    27   8.3  
AF026209-2|AAN84883.1|  863|Caenorhabditis elegans Gex interacti...    27   8.3  
AF026209-1|AAB71278.2|  968|Caenorhabditis elegans Gex interacti...    27   8.3  

>AL132860-20|CAB60503.2|  263|Caenorhabditis elegans Hypothetical
           protein Y56A3A.22 protein.
          Length = 263

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 28/73 (38%), Positives = 45/73 (61%)
 Frame = +3

Query: 297 EKPKREEEKKVGLIQRFKEMYRDYWYVLLPVHMATSAVWFGSCYYTVRSGVDVISILESL 476
           E+ K EE  K  L  + K  ++ YWY+ +P H A+   WF + Y  V+SGVDVIS+LE L
Sbjct: 69  EQMKAEEAPKT-LFAKVKYYFKRYWYIAVPAHAASCTAWFIALYLVVKSGVDVISLLEWL 127

Query: 477 GVTETLLKPLKES 515
            + + +++ +K +
Sbjct: 128 HMPDAIVEKVKNT 140


>Z19154-5|CAA79557.1|  162|Caenorhabditis elegans Hypothetical
           protein C40H1.6 protein.
          Length = 162

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 297 EKPKREEEKKVGLIQRFKEMYRDYWYVLLPVHMATSAVWFGSCYY 431
           E+ K E E  +  +Q  K+  RD W+ L      T   WFG C+Y
Sbjct: 29  ERLKEEYEAIIAAVQNNKDCDRD-WFQLESNERGTK--WFGKCWY 70


>AF166167-1|AAD49856.1|  732|Caenorhabditis elegans adducin-related
           protein protein.
          Length = 732

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 261 SVTRPCTSMNDQEKPKREEEKK 326
           + +R CT+ +++EKP ++E+KK
Sbjct: 697 TTSRSCTTASEEEKPTKDEKKK 718


>AF039043-5|AAK70639.1|  732|Caenorhabditis elegans Adducin protein
           1, isoform b protein.
          Length = 732

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 261 SVTRPCTSMNDQEKPKREEEKK 326
           + +R CT+ +++EKP ++E+KK
Sbjct: 697 TTSRSCTTASEEEKPTKDEKKK 718


>AF039043-4|AAL32219.1|  702|Caenorhabditis elegans Adducin protein
           1, isoform c protein.
          Length = 702

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 261 SVTRPCTSMNDQEKPKREEEKK 326
           + +R CT+ +++EKP ++E+KK
Sbjct: 667 TTSRSCTTASEEEKPTKDEKKK 688


>AF039043-3|AAM54181.1|  682|Caenorhabditis elegans Adducin protein
           1, isoform d protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 261 SVTRPCTSMNDQEKPKREEEKK 326
           + +R CT+ +++EKP ++E+KK
Sbjct: 647 TTSRSCTTASEEEKPTKDEKKK 668


>U23159-1|AAA85857.1| 1005|Caenorhabditis elegans bifunctional
           glyoxylate cycle proteinprotein.
          Length = 1005

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +2

Query: 266 DETMYFNERSRETQAGRREKSWFDPEI*RNVQGLLVCVTSST 391
           + +++F + ++ET+  R ++ W   EI R++Q   V +T  T
Sbjct: 531 NNSLWFPDFNKETEVLRSDQGWKGAEIPRDLQDRRVEITGPT 572


>AF026209-2|AAN84883.1|  863|Caenorhabditis elegans Gex interacting
           protein protein7, isoform b protein.
          Length = 863

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +2

Query: 266 DETMYFNERSRETQAGRREKSWFDPEI*RNVQGLLVCVTSST 391
           + +++F + ++ET+  R ++ W   EI R++Q   V +T  T
Sbjct: 491 NNSLWFPDFNKETEVLRSDQGWKGAEIPRDLQDRRVEITGPT 532


>AF026209-1|AAB71278.2|  968|Caenorhabditis elegans Gex interacting
           protein protein7, isoform a protein.
          Length = 968

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +2

Query: 266 DETMYFNERSRETQAGRREKSWFDPEI*RNVQGLLVCVTSST 391
           + +++F + ++ET+  R ++ W   EI R++Q   V +T  T
Sbjct: 491 NNSLWFPDFNKETEVLRSDQGWKGAEIPRDLQDRRVEITGPT 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,952,760
Number of Sequences: 27780
Number of extensions: 243162
Number of successful extensions: 610
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)