Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0180
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   3.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   5.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.8  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 228 YSQNCDGNKLYLKEFEWGNFCLYPIL 151
           Y Q  D  KL L  F W   CL  ++
Sbjct: 383 YVQEDDDVKLVLLNFGWQMICLIVVI 408


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +1

Query: 346 LKKCTGITGMCYFQYTWRLPLYGSVAAII 432
           L     ITG C+    W   + G + A I
Sbjct: 293 LGSLVAITGGCFLFRAWESIIVGMIGAFI 321


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 267 TRPCTSMNDQEKPKREEEKK 326
           T   T MND   P+ EEE++
Sbjct: 306 TELSTGMNDDIPPETEEEEE 325


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 527 ISSTRFFQRF*ECLC 483
           +S + FFQ+F  C C
Sbjct: 417 LSCSSFFQQFFHCYC 431


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +3

Query: 231 PLLDFQQVSFSVTRPCTSMNDQEKPKREEEKKVGLIQRFK 350
           PL+  Q    S T     ++   KPK  ++  + L+++ K
Sbjct: 495 PLVGVQPHQDSATPADQPLDLSAKPKNSQDNNISLLEQQK 534


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,519
Number of Sequences: 438
Number of extensions: 3067
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)