Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0180
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27290.1 68415.m03280 expressed protein                             39   0.002
At2g20940.1 68415.m02469 expressed protein                             36   0.022
At4g13280.1 68417.m02077 terpene synthase/cyclase family protein...    29   1.5  
At4g11610.1 68417.m01859 C2 domain-containing protein contains I...    29   2.6  
At1g66950.1 68414.m07612 ABC transporter family protein similar ...    29   2.6  
At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot...    24   3.0  
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co...    28   3.4  
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein       28   3.4  
At5g62210.1 68418.m07811 embryo-specific protein-related contain...    27   5.9  
At3g03720.1 68416.m00377 amino acid permease family protein simi...    27   5.9  
At4g00700.1 68417.m00096 C2 domain-containing protein contains I...    27   7.8  

>At2g27290.1 68415.m03280 expressed protein
          Length = 201

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +3

Query: 282 SMNDQEKPKREEEKKVGLIQRFKEMYRDYWYVLLPVHMATSAVWFGSCYYTVRSGVDVIS 461
           S  D E    + +KK       KE+   Y    L   +  S + F  CY  V SGVDV +
Sbjct: 82  SSKDDEGSDGDNKKKKSKTDEAKELLAKYGGAYLATSITLSLISFSLCYVLVTSGVDVQA 141

Query: 462 ILESLGVT 485
           +L  +G++
Sbjct: 142 LLLKVGIS 149


>At2g20940.1 68415.m02469 expressed protein
          Length = 129

 Score = 35.5 bits (78), Expect = 0.022
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 342 RFKEMYRDYWYVLLPVHMATSAVWFGSCYYTVRSGVDVISILE 470
           R KE+ + Y  V L VH + S V     Y  +++ VDV S+LE
Sbjct: 4   RLKEIVKKYGKVALGVHFSVSGVSISGFYIAIKNNVDVESLLE 46


>At4g13280.1 68417.m02077 terpene synthase/cyclase family protein
           predicted protein, Arabidopsis thaliana
          Length = 535

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 297 LDRSLKYMVSSLKSLLAGNPVMAYSQNCDGNKLYLKE 187
           LD +LK+  S LKSLLAG     +      N LYL +
Sbjct: 167 LDEALKFTSSHLKSLLAGGTCRPHILRLIRNTLYLPQ 203


>At4g11610.1 68417.m01859 C2 domain-containing protein contains
            INTERPRO:IPR000008 C2 domain
          Length = 1011

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 443  TPNSIIAATEPYSGSRHVYWK*HIPVIPVHFFKSL 339
            TP  I+ A   +   RH  ++  +P +PV+FF+ L
Sbjct: 969  TPIQIVVALAGFFTMRHPRFRHRLPSVPVNFFRRL 1003


>At1g66950.1 68414.m07612 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1454

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 369 WYVLLPVHMATSAVWFGSCYYTV 437
           W + +P+ +  S +W G  YYT+
Sbjct: 628 WLLKIPLSLIESGIWIGLTYYTI 650


>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 620

 Score = 24.2 bits (50), Expect(2) = 3.0
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 264 LKSLLAGNPVMAYSQNCDGNKLYLKEFEWGNF 169
           L+ L    P  + +Q+CDG++L  ++ + GN+
Sbjct: 359 LELLHGSGPGNSLTQHCDGSELEDEDVDIGNY 390



 Score = 22.6 bits (46), Expect(2) = 3.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 396 PCVLEVTHTSNP 361
           PCVLE+ H S P
Sbjct: 356 PCVLELLHGSGP 367


>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 981

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +3

Query: 234 LLDFQQVSFSVTRPCTSMNDQEKPKREEEKKVGLIQRFKEMYRDYWYVLL-PVHMATSAV 410
           L+ FQ+ +       +S+N   +     + K+ L+  F ++  D   VL+  +  A   V
Sbjct: 118 LMKFQRDAHGFNFTSSSLNTTLQRFGFRKPKLALV--FGDLLADPEQVLMVSLSKALQEV 175

Query: 411 WFGSCYYTVRSGVDVISILESLGVTETLLKPLKES 515
            +    Y++  G  V SI + +GV  T+LKP +ES
Sbjct: 176 GYAIEVYSLEDG-PVNSIWQKMGVPVTILKPNQES 209


>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
          Length = 356

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = +3

Query: 159 DIGKNYPIRILSSKVCCHHNFVNRPLLDFQQVSFSVTRPCTSMNDQ------EKPKREEE 320
           D+      R++  KV     F+   +L+ ++V        +S+ ++      E PK+ EE
Sbjct: 123 DVSLEQSFRMVKPKVQREGGFILEQILELEKVQLREENGSSSLTERGDPSPLELPKKPEE 182

Query: 321 KKVGLIQRFKEMYRDY 368
           + + L Q  KE+  D+
Sbjct: 183 QLIDLPQTGKELVVDF 198


>At5g62210.1 68418.m07811 embryo-specific protein-related contains
           weak similarity to embryo-specific protein 3
           (GI:3335171) [Arabidopsis thaliana]
          Length = 223

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +3

Query: 144 KPVKWDIGKNYPIRILSSKVCCHHNFVNRPLLDFQQVSFSVTRPCTSMNDQEKP 305
           K VK+D  KN P  I      C++  +  P  DF   S S+  P       E P
Sbjct: 131 KSVKFDFNKNVPENIWYGNNYCNNTDLPPPSPDFPPFSPSIPPPSPPYFPPEPP 184


>At3g03720.1 68416.m00377 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 600

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = -1

Query: 405 RKSPCVLEVTHTSNPCTFL*ISGSNQLFSLLPAWVSLDRSLKYMVSSLKSLLAGNPVMAY 226
           ++S  V  +  + N CT + I       +    WV  D    Y    L  +LAG+ V+ +
Sbjct: 178 KESSTVQAIVTSVNVCTLVFIIVVGGYLACKTGWVGYDLPSGYFPFGLNGILAGSAVVFF 237

Query: 225 S 223
           S
Sbjct: 238 S 238


>At4g00700.1 68417.m00096 C2 domain-containing protein contains
            INTERPRO:IPR000008 C2 domain
          Length = 1006

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 443  TPNSIIAATEPYSGSRHVYWK*HIPVIPVHFFKSL 339
            TP  ++A    Y   RH   +  IP  PV+FF+ L
Sbjct: 964  TPFKLVALLSGYYFMRHPKLRHRIPSAPVNFFRRL 998


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,186,856
Number of Sequences: 28952
Number of extensions: 228342
Number of successful extensions: 605
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)