Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0179
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...   128   4e-31
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...   122   4e-29
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   2.5  
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    25   4.4  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   4.4  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   4.4  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   7.7  

>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score =  128 bits (309), Expect = 4e-31
 Identities = 58/115 (50%), Positives = 77/115 (66%)
 Frame = +2

Query: 128 SSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXXX 307
           S +   W+ WF  L+GNEFFCEVDED+I D+FNLTGL+ +VPHY ++LD+          
Sbjct: 10  SDDSQYWVDWFLGLKGNEFFCEVDEDFIQDRFNLTGLSHEVPHYSQSLDLILDVLDPDLP 69

Query: 308 XXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQ 472
                  D VE ++  LYGLIHARYILT +G+ +ML+K++  DFG+CPRV C  Q
Sbjct: 70  EEV---QDEVEASARHLYGLIHARYILTAQGLYKMLEKYKKCDFGHCPRVLCNGQ 121


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score =  122 bits (293), Expect = 4e-29
 Identities = 56/110 (50%), Positives = 71/110 (64%)
 Frame = +2

Query: 134 EEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXXXXX 313
           E VSWI+WFC+  G E+F EV ED+I D FNLTGLN  VP Y EALD+            
Sbjct: 37  ENVSWISWFCSRPGREYFVEVKEDFIEDLFNLTGLNLAVPFYNEALDL--ILDRTAPDTL 94

Query: 314 XXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYC 463
              + D++E +++ILYGLIH RYI+T  G+ QM +K+  G FG CPRV C
Sbjct: 95  ENFDMDVIETSAQILYGLIHQRYIITRTGLHQMAEKYSMGIFGCCPRVNC 144


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 450 GQYPKSPDWNLSNI*LMPLLVNMYRACI 367
           G+ P S   N S   L P L N+Y+AC+
Sbjct: 199 GKRPSSLQSNFSQFPLNPWLDNIYKACL 226


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = -3

Query: 296 LAPDPESC-----PAPLYNVELAHLSRLD*IYHLCSLRQPH 189
           +AP+PES      P P    +  H+  L  + HLC LR+ +
Sbjct: 17  VAPNPESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDY 57


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 177 LPRSVQNQAIQDTSSELLIFLLFYVFKAVFHNFTVN*RIW 58
           LP  ++ + + D   +   +  +Y +++ FHN T   RIW
Sbjct: 302 LPPFMRYRHLSDVEWKSCFYKSYYEYRSWFHNVTNFSRIW 341


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 167 LRGNEFFCEVDEDYINDKFNLTGLNEQVPHYRE 265
           ++ N +F  +D+D I+DK +L   N+ + H  E
Sbjct: 165 IQENPYFNNIDQDSISDK-SLPSTNQSLHHSEE 196


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 316  IVFNVIIWLQIQNHV 272
            IVFN  +WLQ+ N +
Sbjct: 1052 IVFNTFVWLQLFNEI 1066


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,835
Number of Sequences: 5004
Number of extensions: 41436
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)