Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0179
         (472 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0465 + 18465966-18466206,18467424-18467443,18467444-184677...   150   6e-37
10_08_0955 + 21789616-21789778,21791622-21791688,21792285-217923...   143   6e-35
02_01_0139 - 1008675-1008752,1008828-1008905,1009176-1009227,100...    28   3.3  
02_02_0255 + 8357963-8358356,8358948-8359024,8359201-8359276,835...    27   5.8  
02_02_0103 + 6797830-6798433,6799412-6799480,6799573-6799664,679...    27   7.6  

>07_03_0465 +
           18465966-18466206,18467424-18467443,18467444-18467729,
           18468557-18468666,18468744-18468909,18469303-18469433
          Length = 317

 Score =  150 bits (363), Expect = 6e-37
 Identities = 64/113 (56%), Positives = 85/113 (75%)
 Frame = +2

Query: 125 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 304
           S  E+ SWI+W+C+LRGNEFFCEVD+DYI D FNL GL+ QVP+Y  ALD+         
Sbjct: 124 SDGEDHSWISWYCSLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDIESSHG 183

Query: 305 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYC 463
                 +++LVE A+E+LYGLIHARYILT++G++ ML+K+++ DFG CPRVYC
Sbjct: 184 DMFTEEQNELVESAAEMLYGLIHARYILTSKGLAAMLEKYKNYDFGRCPRVYC 236


>10_08_0955 +
           21789616-21789778,21791622-21791688,21792285-21792346,
           21792508-21792729,21792993-21793102,21793195-21793236,
           21793271-21793303
          Length = 232

 Score =  143 bits (347), Expect = 6e-35
 Identities = 60/110 (54%), Positives = 82/110 (74%)
 Frame = +2

Query: 125 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 304
           S  E+ SWI+WFC+LRGNEFFCE+D+DYI D FNL GL+ QVP+Y  ALD+         
Sbjct: 113 SEGEDTSWISWFCSLRGNEFFCEIDDDYIQDDFNLCGLSNQVPYYDYALDLILDIESSNG 172

Query: 305 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPR 454
                 +++L+E ++E+LYGLIHARYILT++G++ ML+KF++ DFG CPR
Sbjct: 173 DVFTEEQNELIESSAEMLYGLIHARYILTSKGLAAMLEKFKNYDFGRCPR 222


>02_01_0139 -
           1008675-1008752,1008828-1008905,1009176-1009227,
           1009369-1009437,1009594-1009652,1009757-1009828,
           1009945-1010038,1010311-1010356,1010510-1010609,
           1010847-1011200,1011362-1011460,1011548-1011595,
           1011679-1011816
          Length = 428

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 338 PPDQIHL-DCLQCHHLAPD 285
           PP+  HL D LQ HHLAPD
Sbjct: 14  PPEVAHLVDQLQRHHLAPD 32


>02_02_0255 +
           8357963-8358356,8358948-8359024,8359201-8359276,
           8359665-8359846,8360173-8360318,8360405-8360669,
           8360688-8361053,8361265-8361513
          Length = 584

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 144 DTSSELLIFLLFYVFKAVFHNFTVN*RIWQRFNVFF---FAVIMEY 16
           D SSE+LI LL  +   +F +F  +  +W  F  F     ++IM Y
Sbjct: 530 DFSSEVLIILLVCIIMGLFTSFRTDFPLWTCFVAFLLYPLSLIMVY 575


>02_02_0103 +
           6797830-6798433,6799412-6799480,6799573-6799664,
           6799968-6800002,6800306-6800470,6800561-6800657,
           6800915-6801031
          Length = 392

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +2

Query: 173 GNEFFCEVDEDYIND--KFNLT 232
           G  F  + DEDYIND  +FNLT
Sbjct: 110 GGGFGADPDEDYINDAARFNLT 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,072,506
Number of Sequences: 37544
Number of extensions: 271594
Number of successful extensions: 597
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)