Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0179
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25395| Best HMM Match : CK_II_beta (HMM E-Value=0)                 160   6e-40
SB_3780| Best HMM Match : No HMM Matches (HMM E-Value=.)              100   1e-21
SB_44585| Best HMM Match : DeoC (HMM E-Value=3.7e-13)                  61   4e-10
SB_34168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_22262| Best HMM Match : Oleosin (HMM E-Value=0.98)                  29   1.9  
SB_53813| Best HMM Match : RA (HMM E-Value=1.1)                        29   1.9  
SB_44079| Best HMM Match : Keratin_B2 (HMM E-Value=0.3)                29   2.6  
SB_51816| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-24)                 27   5.9  
SB_107| Best HMM Match : Transposase_28 (HMM E-Value=0.55)             27   7.8  

>SB_25395| Best HMM Match : CK_II_beta (HMM E-Value=0)
          Length = 408

 Score =  160 bits (388), Expect = 6e-40
 Identities = 72/101 (71%), Positives = 82/101 (81%)
 Frame = +2

Query: 122 MSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXX 301
           MSSSEEVSWI+WFC LRGNEFFCEVDEDYI DKFNLTGLNEQVPHYR+ALDM        
Sbjct: 1   MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDMEPDD 60

Query: 302 XXXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKF 424
                  +SDL+EQA+E+LYGLIHARYILTNRG++QM+  +
Sbjct: 61  ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGLAQMVTTY 101


>SB_3780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 9/115 (7%)
 Frame = +2

Query: 146 WIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXXXXXXXXE 325
           WI  FCT  GN+FFCE++++Y+ D+ NL GL+E+V  + +AL +                
Sbjct: 25  WIHRFCTKLGNDFFCEIEKEYVRDQSNLVGLDEEVSCFSQALSVILDRTDKTDDDFVRFS 84

Query: 326 S---------DLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYC 463
                       V +A+E LYGLIHARYIL+ RG  +ML K+  GDFG+CPRV C
Sbjct: 85  KISYQPNGMDKTVAKAAEHLYGLIHARYILSERGCKKMLYKYLQGDFGHCPRVLC 139


>SB_44585| Best HMM Match : DeoC (HMM E-Value=3.7e-13)
          Length = 473

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = +2

Query: 194 VDEDYINDKFNLTGLNEQVPHYREALDM 277
           VDEDYI DKFNLTGLNEQVPHYR+ALDM
Sbjct: 1   VDEDYIQDKFNLTGLNEQVPHYRQALDM 28


>SB_34168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 448 AISKIPRLELIQHLTNAPIGQYVPGMY 368
           AI + P   L++HLT+  IG+YV  +Y
Sbjct: 125 AIKEDPTWVLVEHLTDLGIGEYVTDLY 151


>SB_22262| Best HMM Match : Oleosin (HMM E-Value=0.98)
          Length = 418

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 439 KIPRLELIQHLTNAPIGQYVPGMYQS 362
           K PR  + +H  N P  +YVP +YQ+
Sbjct: 23  KPPRTAMRRHSANVPKSRYVPSLYQN 48


>SB_53813| Best HMM Match : RA (HMM E-Value=1.1)
          Length = 553

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 448 AISKIPRLELIQHLTNAPIGQYVPGMY 368
           AI + P   L++HLT+  IG+YV  +Y
Sbjct: 233 AIKEDPTWVLVEHLTDLGIGEYVTDLY 259


>SB_44079| Best HMM Match : Keratin_B2 (HMM E-Value=0.3)
          Length = 285

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 395 YWSICTGHVSIHIVSPMLVPPDQIHLDCLQCHHLAPDPESCPAPLYN 255
           +W I   H  + + SP+L    ++HL  L  H L       P PLYN
Sbjct: 14  FWCI---HWKLALHSPVLA--HELHLGYLSSHRLGSSVGGTPVPLYN 55


>SB_51816| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-24)
          Length = 384

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 460 VYTWAISKIPRLELIQHLTNAPIGQYVPGMY 368
           V+ WA++ +P L L+  L++  I  Y PG +
Sbjct: 139 VFVWALALLPGLPLLALLSDKVILVYFPGFF 169


>SB_107| Best HMM Match : Transposase_28 (HMM E-Value=0.55)
          Length = 320

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 285 IWSQMMTLKTIQMNLIWWNKHRRYYMD 365
           +W   +  + ++  L++  KH RYY+D
Sbjct: 61  LWRHKLKTEMVKDELVFEEKHERYYLD 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,101,457
Number of Sequences: 59808
Number of extensions: 305023
Number of successful extensions: 644
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)