Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0179
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75713-9|CAB00053.1|  235|Caenorhabditis elegans Hypothetical pr...   182   1e-46
Z75713-8|CAB00056.1|  234|Caenorhabditis elegans Hypothetical pr...   178   2e-45
M73827-1|AAA27983.1|  234|Caenorhabditis elegans casein kinase I...   178   2e-45
Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical pr...    30   0.96 
U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF003151-11|AAO61426.1|  402|Caenorhabditis elegans Hypothetical...    27   9.0  
AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical...    27   9.0  

>Z75713-9|CAB00053.1|  235|Caenorhabditis elegans Hypothetical
           protein T01G9.6b protein.
          Length = 235

 Score =  182 bits (443), Expect = 1e-46
 Identities = 83/117 (70%), Positives = 93/117 (79%)
 Frame = +2

Query: 122 MSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXX 301
           MSSSEEVSWI WFC LRGNEFFCEVDE+YI D+FNLTGLNEQVP YR+ALDM        
Sbjct: 1   MSSSEEVSWITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDMILDLEPED 60

Query: 302 XXXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQ 472
                   +DLVEQA+E+LYGLIHARYILTNRGISQM++K++  DFG CPRVYCE Q
Sbjct: 61  DIEDNATNTDLVEQAAEMLYGLIHARYILTNRGISQMVEKWRDHDFGVCPRVYCENQ 117


>Z75713-8|CAB00056.1|  234|Caenorhabditis elegans Hypothetical
           protein T01G9.6a protein.
          Length = 234

 Score =  178 bits (433), Expect = 2e-45
 Identities = 83/117 (70%), Positives = 93/117 (79%)
 Frame = +2

Query: 122 MSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXX 301
           MSSSEEVSWI WFC LRGNEFFCEVDE+YI D+FNLTGLNEQVP YR+ALDM        
Sbjct: 1   MSSSEEVSWITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDM-ILDLEPD 59

Query: 302 XXXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQ 472
                   +DLVEQA+E+LYGLIHARYILTNRGISQM++K++  DFG CPRVYCE Q
Sbjct: 60  DIEDNATNTDLVEQAAEMLYGLIHARYILTNRGISQMVEKWRDHDFGVCPRVYCENQ 116


>M73827-1|AAA27983.1|  234|Caenorhabditis elegans casein kinase II
           beta subunit protein.
          Length = 234

 Score =  178 bits (433), Expect = 2e-45
 Identities = 83/117 (70%), Positives = 93/117 (79%)
 Frame = +2

Query: 122 MSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXX 301
           MSSSEEVSWI WFC LRGNEFFCEVDE+YI D+FNLTGLNEQVP YR+ALDM        
Sbjct: 1   MSSSEEVSWITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDM-ILDLEPD 59

Query: 302 XXXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQ 472
                   +DLVEQA+E+LYGLIHARYILTNRGISQM++K++  DFG CPRVYCE Q
Sbjct: 60  DIEDNATNTDLVEQAAEMLYGLIHARYILTNRGISQMVEKWRDHDFGVCPRVYCENQ 116


>Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical
           protein K11E4.1 protein.
          Length = 299

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 131 SEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHY 259
           +E++ +  +     GNE F    +  + DKFN+   N+Q+P +
Sbjct: 176 AEQMFYFGYGSPRCGNEDFAYYVDSSLADKFNIVWFNDQIPEF 218


>U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical
           protein C09F5.1 protein.
          Length = 571

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 129 LLIFLLFYVFKAVFHNFTVN 70
           LL+FL+F +F A+F+ + V+
Sbjct: 296 LLLFLMFIIFNAIFNRYAVS 315


>Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical
           protein C05C10.3 protein.
          Length = 521

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 389 SICTGHVSIHIVSPMLVPPDQIHLDCLQCHHL 294
           S CT      IV P ++ P+ +H+  + CH L
Sbjct: 237 SKCTIVEVEEIVEPGVIAPNDVHIPSIYCHRL 268


>AF003151-11|AAO61426.1|  402|Caenorhabditis elegans Hypothetical
           protein D1007.5b protein.
          Length = 402

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 165 VQNQAIQDTSSELLIFLLFYVFKAVFHNFTVN*RIWQRFNVFFFAVI 25
           V+  AI+     L+I    + F  V H+F     +W  F + F+A I
Sbjct: 133 VEYAAIKTPVMTLIITSFLFSFNRVCHDFPSRSVLWFLFPILFYAFI 179


>AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical
           protein D1007.5a protein.
          Length = 477

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 165 VQNQAIQDTSSELLIFLLFYVFKAVFHNFTVN*RIWQRFNVFFFAVI 25
           V+  AI+     L+I    + F  V H+F     +W  F + F+A I
Sbjct: 133 VEYAAIKTPVMTLIITSFLFSFNRVCHDFPSRSVLWFLFPILFYAFI 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,434,463
Number of Sequences: 27780
Number of extensions: 239552
Number of successful extensions: 599
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)