Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0179
(472 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g47080.2 68418.m05803 casein kinase II beta chain, putative s... 151 2e-37
At5g47080.1 68418.m05802 casein kinase II beta chain, putative s... 151 2e-37
At4g17640.1 68417.m02637 casein kinase II beta chain, putative s... 151 2e-37
At2g44680.2 68415.m05561 casein kinase II beta chain, putative s... 144 2e-35
At2g44680.1 68415.m05560 casein kinase II beta chain, putative s... 144 2e-35
At3g60250.1 68416.m06734 casein kinase II beta chain, putative (... 142 1e-34
At4g34900.1 68417.m04949 xanthine dehydrogenase, putative simila... 31 0.39
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 30 0.91
At1g20530.1 68414.m02558 hypothetical protein 29 2.1
At3g10116.1 68416.m01213 hypothetical protein 28 2.8
At5g08060.1 68418.m00940 expressed protein sigma factor F inhibi... 27 8.5
At1g67900.2 68414.m07754 phototropic-responsive NPH3 family prot... 27 8.5
At1g67900.1 68414.m07753 phototropic-responsive NPH3 family prot... 27 8.5
>At5g47080.2 68418.m05803 casein kinase II beta chain, putative
similar to casein kinase II beta chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:P40228
Length = 256
Score = 151 bits (366), Expect = 2e-37
Identities = 64/113 (56%), Positives = 83/113 (73%)
Frame = +2
Query: 125 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 304
S E+ SWI+WFC LRGNEFFCEVD+DYI D FNL GL+ VP+Y ALD+
Sbjct: 94 SDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQG 153
Query: 305 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYC 463
+++L+E A+E+LYGLIHARYILT++G++ MLDK+++ DFG CPRVYC
Sbjct: 154 EMFTEEQNELIESAAEMLYGLIHARYILTSKGLAAMLDKYKNYDFGRCPRVYC 206
>At5g47080.1 68418.m05802 casein kinase II beta chain, putative
similar to casein kinase II beta chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:P40228
Length = 287
Score = 151 bits (366), Expect = 2e-37
Identities = 64/113 (56%), Positives = 83/113 (73%)
Frame = +2
Query: 125 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 304
S E+ SWI+WFC LRGNEFFCEVD+DYI D FNL GL+ VP+Y ALD+
Sbjct: 94 SDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQG 153
Query: 305 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYC 463
+++L+E A+E+LYGLIHARYILT++G++ MLDK+++ DFG CPRVYC
Sbjct: 154 EMFTEEQNELIESAAEMLYGLIHARYILTSKGLAAMLDKYKNYDFGRCPRVYC 206
>At4g17640.1 68417.m02637 casein kinase II beta chain, putative
similar to casein kinase II beta' chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:P40229
Length = 282
Score = 151 bits (366), Expect = 2e-37
Identities = 63/113 (55%), Positives = 84/113 (74%)
Frame = +2
Query: 125 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 304
S E+ SWI+WFC LRGNEFFCEVD+DYI D FNL GL+ QVP+Y ALD+
Sbjct: 89 SDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHG 148
Query: 305 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYC 463
+++L+E A+E+LYG+IHAR+ILT++G++ MLDK+++ DFG CPRVYC
Sbjct: 149 EMFTEEQNELIESAAEMLYGMIHARFILTSKGLASMLDKYKNYDFGRCPRVYC 201
>At2g44680.2 68415.m05561 casein kinase II beta chain, putative
similar to casein kinase II beta-3 chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:O81275
Length = 282
Score = 144 bits (350), Expect = 2e-35
Identities = 61/113 (53%), Positives = 81/113 (71%)
Frame = +2
Query: 125 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 304
S ++ SWI+WFC LRGNEFFCEVDEDYI D FNL GL+ QVP+Y ALD+
Sbjct: 89 SEGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNG 148
Query: 305 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYC 463
+ ++VE A+E+LYGLIH RYILT +G++ M++K+++ DFG CPRV+C
Sbjct: 149 DMFTEEQHEMVESAAEMLYGLIHVRYILTTKGMAAMMEKYKNYDFGRCPRVFC 201
>At2g44680.1 68415.m05560 casein kinase II beta chain, putative
similar to casein kinase II beta-3 chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:O81275
Length = 283
Score = 144 bits (350), Expect = 2e-35
Identities = 61/113 (53%), Positives = 81/113 (71%)
Frame = +2
Query: 125 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 304
S ++ SWI+WFC LRGNEFFCEVDEDYI D FNL GL+ QVP+Y ALD+
Sbjct: 89 SEGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNG 148
Query: 305 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYC 463
+ ++VE A+E+LYGLIH RYILT +G++ M++K+++ DFG CPRV+C
Sbjct: 149 DMFTEEQHEMVESAAEMLYGLIHVRYILTTKGMAAMMEKYKNYDFGRCPRVFC 201
>At3g60250.1 68416.m06734 casein kinase II beta chain, putative
(CKB3) similar to casein kinase II beta-3 chain (CK II)
[Arabidopsis thaliana SWISS-PROT:O81275
Length = 276
Score = 142 bits (344), Expect = 1e-34
Identities = 60/113 (53%), Positives = 80/113 (70%)
Frame = +2
Query: 125 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXX 304
S ++ SWI+WFC LRGN+FFCEVDEDYI D FNL GL+ QVP+Y ALD+
Sbjct: 83 SEGDDTSWISWFCNLRGNDFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNS 142
Query: 305 XXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYC 463
+ ++VE A+E+LYGLIH RYILT +G++ M +K+++ DFG CPRV+C
Sbjct: 143 EMFTDEQHEMVESAAEMLYGLIHVRYILTTKGMAAMTEKYKNCDFGRCPRVFC 195
>At4g34900.1 68417.m04949 xanthine dehydrogenase, putative similar
to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
[SP|P47990], from Calliphora vicina [SP|P08793];
contains Pfam profile PF02738 Aldehyde oxidase and
xanthine dehydrogenase, molybdopterin binding domain
Length = 1364
Score = 31.1 bits (67), Expect = 0.39
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -3
Query: 383 CTGHVSIHI-VSPMLVPPDQIHLDCLQCHHLAPDPESCPAPLYNVELAHLSRLD*IYH 213
CT VS + S VP +H C H A + +C APLY+VE H+ ++ + H
Sbjct: 51 CTVMVSSYDRESKTCVPSYTVHTGNFYCRHYAVN--ACLAPLYSVEGMHVISIEGVGH 106
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 29.9 bits (64), Expect = 0.91
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -3
Query: 323 HLDCLQC--HHLAPDPESCPAPLYNVELAH 240
H+ C QC ++ D ++CPAP +LAH
Sbjct: 696 HIFCYQCVSDYITGDEDTCPAPRCREQLAH 725
>At1g20530.1 68414.m02558 hypothetical protein
Length = 614
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -1
Query: 352 LRCLFHQIRFIWIVFNVI----IWLQIQNHVQRLSIMWNLLI 239
+R H+I I + N + +W Q++ + RLS MWN ++
Sbjct: 370 MRVSIHKINNICLTINKLRDEELWFQMKELIHRLSEMWNSML 411
>At3g10116.1 68416.m01213 hypothetical protein
Length = 170
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 246 KFHIIERRWT*FWIWSQMMTLKTI 317
K+H IE W WIW + L T+
Sbjct: 19 KYHDIEGPWVLDWIWEDQILLSTV 42
>At5g08060.1 68418.m00940 expressed protein sigma factor F inhibitor
spoIIAB, Bacillus megaterium, PIR:B48402
Length = 131
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 377 RYILTNRGISQMLDKFQSGDFGYCPRVY 460
RY+LT + QM+++ +S D P+VY
Sbjct: 86 RYVLTKDNVVQMMNEKKSFDVSDFPKVY 113
>At1g67900.2 68414.m07754 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 631
Score = 26.6 bits (56), Expect = 8.5
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -2
Query: 249 TCSFKPVRLNLSFM*SSSTSQKNSLPRSVQNQAIQDTSSELLI 121
+CSF L + + ++STS K L R V Q + T S+LLI
Sbjct: 291 SCSFLLKLLKAANILNASTSSKMELARRVALQLEEATVSDLLI 333
>At1g67900.1 68414.m07753 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 631
Score = 26.6 bits (56), Expect = 8.5
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -2
Query: 249 TCSFKPVRLNLSFM*SSSTSQKNSLPRSVQNQAIQDTSSELLI 121
+CSF L + + ++STS K L R V Q + T S+LLI
Sbjct: 291 SCSFLLKLLKAANILNASTSSKMELARRVALQLEEATVSDLLI 333
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,689,653
Number of Sequences: 28952
Number of extensions: 219688
Number of successful extensions: 606
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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