Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0177
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch... 139 4e-34
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 27 1.8
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 27 3.1
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 4.1
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 5.4
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 25 7.2
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 7.2
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 25 7.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
>SPAC1805.02c |||electron transfer flavoprotein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 139 bits (336), Expect = 4e-34
Identities = 75/176 (42%), Positives = 107/176 (60%)
Frame = +3
Query: 12 AAGIGTRRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGKQAIDDDSNQTAQM 191
A GIG RA + V E L+P+ VAK+L + EK++LV++GKQAIDDD++QT M
Sbjct: 82 AKGIG--RAALINVGEKE---LEPLSVAKLLKATVEKEKSNLVLLGKQAIDDDAHQTGGM 136
Query: 192 TAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVLSADLRLNEPRYATLPN 371
AA+L WPQ T ASK+ + +TREIDGG E + + +PA+++ DLRLN PR+A L
Sbjct: 137 LAAMLGWPQFTSASKVRIEGDKVIVTREIDGGEETLSSTLPAIITTDLRLNVPRFANLAK 196
Query: 372 IMXXXXXXXXXXXXXDLGVDLAPRIKVVSVEDPPVRQAGSIIPDVDTLVAKLKEGG 539
+M DLGV + R++ VSV +P ++ ++ VD +V LKE G
Sbjct: 197 VMKARKAPLGKMSPEDLGVTIDQRLQTVSVSEPVQKRQNIMVKSVDEMVKTLKELG 252
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 568 IKSSIYDYTCPPSLSLATRVSTSGMMEPACRTGGSSTETTLIRGARSTP 422
+ S +Y YT + A+ +ST+G + A G + ETT A TP
Sbjct: 36 VTSKVYAYTTVTLEAAASAISTNGAAKEAATAAGDA-ETTSSVAASVTP 83
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -3
Query: 283 PSISRVIVRAPSVFSIFDANVPCGQS 206
PS+S V RAP FS +ANVP G++
Sbjct: 285 PSMSYVY-RAPESFSSINANVPYGRN 309
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 602 KNVPYDFSLLIN*KFDLRLHMSAFLKLSNE-SVDIRYDGASLSD--WRIFHRDHLDTRC 435
K +P+D S+L N +L + FLK + E VD D W+I + DH+ C
Sbjct: 1214 KGLPFDKSILDNHSAELNDAFNLFLKAAVEYKVDSNESSEHFQDTRWKIIY-DHVCKLC 1271
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 298 ITSKPPSISRVIVRAPSVFSIFDANVPCGQSNKAAVI 188
ITS P+ S++ VR + S FD ++P G S A I
Sbjct: 143 ITSSTPTPSQLPVRPSTSLSFFD-DIPLGPSFSAETI 178
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -3
Query: 229 ANVPCGQSNKAAVICAVWLES--SSMACL 149
A+ PCG+ KAA C V+ +S M CL
Sbjct: 206 AHGPCGEEFKAAFSCFVYSKSEPKGMECL 234
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +2
Query: 545 VIVNRTFNLSIVKNHREHFYIKC 613
++++++F IVKNH + +KC
Sbjct: 461 LVISKSFGTLIVKNHNQLSLLKC 483
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 464 FHRDHLDTRCQVHPKVFGTYFFERLL 387
FH DH+ R ++P V Y +LL
Sbjct: 312 FHSDHMRIRYALYPNVAMKYILRKLL 337
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 9.5
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 16/165 (9%)
Frame = -3
Query: 568 IKSSIYDYTCPPSLSLATRVSTSGMMEPACRT---GGSSTETTLIRGARSTPRSLALTFL 398
I S I + P + S + + +S P+ + SST +T + S+P S++ +
Sbjct: 560 ISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSIS 619
Query: 397 RGFFF---------AFMMLGSVAYRGSFS-RRSALSTAGIFVLITSKPPSI---SRVIVR 257
+ M+ S GS S S++ST I +++ S+ S +V
Sbjct: 620 SSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVS 679
Query: 256 APSVFSIFDANVPCGQSNKAAVICAVWLESSSMACLPTITKSAFS 122
+ S S+ ++ P S+ + + + L S+ A L IT S+ S
Sbjct: 680 SSS--SLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLS 722
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,129
Number of Sequences: 5004
Number of extensions: 54013
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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