Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0177
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0424 - 5601690-5601915,5602099-5602187,5603298-5603378,560... 169 1e-42
02_03_0080 + 14935664-14935796,14943858-14944175,14944352-149451... 29 2.4
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 29 3.2
04_04_0911 - 29340222-29341103 29 4.2
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453... 29 4.2
11_02_0149 - 8801675-8804332 28 5.6
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 28 5.6
04_01_0534 - 6958965-6959339,6960604-6960732 28 5.6
08_02_0902 - 22408895-22409620,22410190-22410326,22410550-224106... 28 7.4
02_01_0429 - 3132848-3135043 28 7.4
12_01_0241 - 1807379-1807418,1807579-1807625,1807800-1807892,180... 27 9.8
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026 27 9.8
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 27 9.8
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711... 27 9.8
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 27 9.8
>04_01_0424 -
5601690-5601915,5602099-5602187,5603298-5603378,
5604875-5605240
Length = 253
Score = 169 bits (412), Expect = 1e-42
Identities = 89/178 (50%), Positives = 110/178 (61%)
Frame = +3
Query: 12 AAGIGTRRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGKQAIDDDSNQTAQM 191
A +G RA+HV L P+ VAKIL L+ E LVI+GKQAIDDD NQT QM
Sbjct: 75 ALAMGADRAVHVLHDPDPSRPLLPLAVAKILRALALQENPGLVILGKQAIDDDCNQTGQM 134
Query: 192 TAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVLSADLRLNEPRYATLPN 371
A LL+WPQGTFASK+ T+ RE+DGG+E I +PAV++ DLRLN+PRYATLPN
Sbjct: 135 LAGLLNWPQGTFASKVILNKEKATVEREVDGGIETISLDLPAVITTDLRLNQPRYATLPN 194
Query: 372 IMXXXXXXXXXXXXXDLGVDLAPRIKVVSVEDPPVRQAGSIIPDVDTLVAKLKEGGHV 545
IM DL VD+ ++VV V +PP R+AG I+ VD LV +LK V
Sbjct: 195 IMKAKSKVIKKVTPEDLDVDIRSDMEVVEVTEPPKRKAGVILSSVDELVDRLKNEARV 252
>02_03_0080 +
14935664-14935796,14943858-14944175,14944352-14945199,
14945249-14945521
Length = 523
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 105 AKLSQDEKADLVIVGKQAIDDDSNQTAQMTAAL--LDWPQGTFASKIEKTDG 254
A+L + + +G D+D + A T+ L +DWP G + IEK DG
Sbjct: 29 ARLRSGNGEEAMQLGGDRYDNDVDGVAAFTSKLRRVDWPAGFKPTGIEKYDG 80
>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 165 DDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVL 323
DD+N ++LD Q F+ KI K+ G L +E+ G + ++P+ L
Sbjct: 1373 DDANIIKLSKLSILDLEQNMFSGKIPKSIGQLKRLKELRLGENKLYGELPSTL 1425
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 165 DDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVL 323
DD+N ++LD Q F+ I K+ G L +E+ G + ++P+ L
Sbjct: 693 DDANIIKLSKLSILDLQQNIFSGNIPKSIGQLKRLKELHLGENYLYGELPSTL 745
>04_04_0911 - 29340222-29341103
Length = 293
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 532 SLSLATRVSTSGMMEPACRTGGSSTETTLIRGARST 425
S++ R STS P CR G SS+ RG ST
Sbjct: 233 SITAFARASTSATSTPLCRRGSSSSSAPQGRGFIST 268
>02_04_0005 -
18843061-18843201,18843309-18843440,18844457-18845315,
18845884-18845973,18846748-18846869,18846950-18847049,
18847151-18847205,18847275-18847365,18847453-18847572,
18847681-18847780,18847890-18848018,18848099-18848201,
18848670-18848743,18848848-18848933,18849297-18849358,
18849454-18849541,18849937-18850029
Length = 814
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 286 PPSISRVIVRAPSVFSIFDANVPCGQSNKAAVI 188
PP++ ++ ++ D ++P G NKAAV+
Sbjct: 702 PPTVREPVINRSGMYPKVDLDIPIGIHNKAAVV 734
>11_02_0149 - 8801675-8804332
Length = 885
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +3
Query: 417 DLGVDLAPRIKVVSVEDPPVRQAGSIIPDVDTLVAKLKEGGHV*S*IELLIY 572
D+ +DL P+++ V + D P ++ +IP DTL+ + +V S +E L+Y
Sbjct: 389 DVMIDLFPKMQEVRIADCPKLESLPLIPWTDTLLT--VDMKNVGSSLEKLVY 438
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 322 STAGIFVLITSKPPSISRVIVRAPSVFSIFDANVPCGQSNKAAVICA 182
S A +F + +PPS R +R P + F A CG+ N A+ CA
Sbjct: 112 SPATVFRIRLKQPPSSLRHKMRVPELCRNFSAVAWCGKLN--AIACA 156
>04_01_0534 - 6958965-6959339,6960604-6960732
Length = 167
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 553 YDYTCPPSLSLATRVSTSGMMEPACRTGGSSTETTL 446
+D+ CP + ++T V G +EP G E T+
Sbjct: 4 FDHMCPGFVQVSTSVGIGGRIEPVSTYNGDQYEITV 39
>08_02_0902 -
22408895-22409620,22410190-22410326,22410550-22410685,
22410787-22411224
Length = 478
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = -3
Query: 511 VSTSGMMEPACRTGGSSTETTLIRGARSTPRSLALTFLRGFFFAFMMLGSVAYRGSFSRR 332
+S+S A R SS +T TP L+LT +AF A G FSR
Sbjct: 44 LSSSSSASSASRVSLSSLSST----GTLTPEDLSLTLSGSNLYAFTYAEMRAVTGGFSRA 99
Query: 331 SALSTAG 311
+ L + G
Sbjct: 100 NYLGSGG 106
>02_01_0429 - 3132848-3135043
Length = 731
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 165 DDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVL 323
DD+N ++LD Q F+ I K+ G L +E+ G + ++P+ L
Sbjct: 270 DDANIIKLSKLSILDLQQNIFSGNIPKSIGQLKRLKELHLGENYLYGELPSTL 322
>12_01_0241 -
1807379-1807418,1807579-1807625,1807800-1807892,
1808167-1808267,1808368-1808440,1808684-1808845,
1809003-1809034,1809399-1809471,1809713-1809768,
1809871-1810105
Length = 303
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = -3
Query: 541 CPPSLSLATRVSTS-----GMMEPACRTGGSSTETTLIRGAR-STPRSLALTFLRGFFFA 380
C P+ + A++ STS G++ R GSS IRGAR +L R A
Sbjct: 16 CRPAQAAASKPSTSSSPGTGVLVGVPRERGSSVSKAAIRGARLEAAARCSLVRQRPMLLA 75
Query: 379 FMMLGSVAYRGS 344
+ +GS+ G+
Sbjct: 76 TVAVGSLVAAGA 87
>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
Length = 961
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 547 YTCPPSLSLAT-RVSTSGMMEPACRTGGSSTETTLIRGARSTPR 419
YTCPP+++++T +ST ++ P S+ + R PR
Sbjct: 469 YTCPPAINVSTSTLSTCCILTPEAAANASAGDLDAGRATSYLPR 512
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 27 TRRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLV-IVGKQAIDDDSNQTAQMTAA 200
TR+ H+ + ++DT P V K S+ + D + K+ +D+DS+ + T A
Sbjct: 138 TRKERHINIVPFKFDTPSPDDVVATGLKSSRSFRKDAPHVTEKRVMDNDSSTPEKDTTA 196
>02_02_0138 +
7114949-7115656,7116388-7116435,7116830-7117988,
7118336-7118424,7118697-7118732
Length = 679
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 253 PSVFSIFDANVPC-GQSNKAAVICAVWLESSSMACLPTI 140
P VF+ + + C G+SNK + C+++ E S C P I
Sbjct: 547 PDVFT-YSILIECFGKSNKVEMACSLFDEMISEGCTPNI 584
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +3
Query: 159 IDDDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPA 317
+ D+S Q A+ + +W Q F+ + T E+ G KT +PA
Sbjct: 817 VSDESQQPAEASGLGRNWVQSMFSRDRSLRASSFNRTNEVKVGATAGKTDLPA 869
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,272,459
Number of Sequences: 37544
Number of extensions: 378221
Number of successful extensions: 1071
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -