Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0177
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43086| Best HMM Match : ETF (HMM E-Value=2e-11)                     85   5e-17
SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)                29   4.3  
SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)               29   4.3  
SB_54715| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)               28   7.6  
SB_33698| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    28   7.6  
SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_43086| Best HMM Match : ETF (HMM E-Value=2e-11)
          Length = 184

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 38/69 (55%), Positives = 52/69 (75%)
 Frame = +3

Query: 12  AAGIGTRRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGKQAIDDDSNQTAQM 191
           A  +G  R +HV +   EY+ LQP+ VAK+LAK+ + E+  LVI+GKQAIDDD NQT+QM
Sbjct: 54  ALAMGADRGVHVVLGDKEYEGLQPLAVAKLLAKVVEQEQPGLVILGKQAIDDDCNQTSQM 113

Query: 192 TAALLDWPQ 218
            +A+L+WPQ
Sbjct: 114 LSAILNWPQ 122



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/41 (58%), Positives = 33/41 (80%)
 Frame = +3

Query: 417 DLGVDLAPRIKVVSVEDPPVRQAGSIIPDVDTLVAKLKEGG 539
           DLGVD+ PRI++++V+DPPVR+AG  +  VD LV KLK+ G
Sbjct: 142 DLGVDVTPRIQILNVQDPPVREAGIKVETVDDLVTKLKDAG 182


>SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)
          Length = 442

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/86 (25%), Positives = 35/86 (40%)
 Frame = +3

Query: 288 LEVIKTKIPAVLSADLRLNEPRYATLPNIMXXXXXXXXXXXXXDLGVDLAPRIKVVSVED 467
           +  I  KIP V +   R+  PR +T+   +              L +   PRI  ++ + 
Sbjct: 106 VSTIACKIPRVSTIAYRI--PRVSTIARKIPRVACKIPRVSTIALNI---PRIGTIACKI 160

Query: 468 PPVRQAGSIIPDVDTLVAKLKEGGHV 545
           P V      IP V T+  K+  GG +
Sbjct: 161 PRVSAIAREIPQVGTIACKIPRGGTI 186


>SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)
          Length = 600

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
 Frame = -3

Query: 556 IYDYTCPPSLSLATRVSTSGMMEPACRTGGSSTETTLIRGARSTPRSLALTFLRGFFFAF 377
           I DY     L+L  RVS+SG  +     GG+ + +  +   RS P S A  ++     A 
Sbjct: 114 ILDYARNDGLNLTARVSSSG-TQGVAEIGGTGSASLRL---RSLPIS-ASPWVPEDXVAI 168

Query: 376 MMLGSVAYRGSFSRRSALSTAGIFVLITSKPPSI-SRVIVRAPSVFS 239
           M++G +    S S R   S   +F++       I SR  V  PS+ S
Sbjct: 169 MIVGKLHSNCSNSLRIFFSAVFLFIVYYKTADDISSRSSVTFPSLDS 215


>SB_54715| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)
          Length = 1143

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 219  GTFASKIEKTDGALTITREIDGGLEVIKTKIPAVLSADLRLNEPR 353
            G    K E   G  TI +E+ GG+  IK ++   +    R+  PR
Sbjct: 1052 GVGTIKQEVQGGVRTIKQEVQGGVGTIKQEVQGGVDQAYRVRRPR 1096


>SB_33698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -2

Query: 41 NSSPRADSCSPGD 3
          NS PR++SCSPGD
Sbjct: 18 NSRPRSNSCSPGD 30


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = +3

Query: 102  LAKLSQDEKADLVIVGKQAIDDDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREI 278
            + +L +D    + ++   A+D D     ++    L  P G+F + ++   G +T+ R I
Sbjct: 2713 VTQLPEDSAVGVTVMNVTAVDADEGTNVELNYEFLLSPYGSFLA-VDARTGMITLNRAI 2770


>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 9   RAAGIGTRRAIHV----EVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGKQAI 161
           R AGI  R    +    E+ G    TL P     ILA++S+ +KAD+   G + I
Sbjct: 71  RNAGIPVRDVSEITGAPEMLGGRVKTLHPAVHGGILARVSEGDKADMAKQGFEYI 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,674,485
Number of Sequences: 59808
Number of extensions: 436290
Number of successful extensions: 1257
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)