Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0177
         (651 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    23   6.3  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   6.3  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   8.4  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   8.4  

>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 211 QSNKAAVICA-VWLESSSMACLPTITKS 131
           Q++   V C+ +W   SSM C P  T S
Sbjct: 58  QASTCPVPCSSIWSRPSSMRCAPARTAS 85


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 481 CRTGGSSTETTLIRGARSTPRSLALTFL 398
           C  G SS   +    ARSTP+   L F+
Sbjct: 894 CTNGSSSGRDSQPSSARSTPKKQNLKFI 921


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
           protein.
          Length = 3325

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 235 FDANVPCGQSNKAAVICAVWLESSSMACL 149
           FD +    Q +K  V+ A +L+ + + CL
Sbjct: 363 FDTDPKLSQGHKCDVVAATFLDVAVLRCL 391


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 377  ESKEEASQKSKCQRPWGGPGTSYQGGLCGRSSSP 478
            +SKE A+ + K Q   G P +S    +   S+SP
Sbjct: 1439 KSKESAATRPKDQPGGGSPASSSGMAILDMSASP 1472


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,645
Number of Sequences: 2352
Number of extensions: 13478
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)