Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0177
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106583-2|AAD03129.2|  255|Caenorhabditis elegans Hypothetical ...   196   9e-51
AF025472-5|AAB71076.1|  423|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF040652-5|AAB95022.2|  378|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin...    29   3.8  

>AF106583-2|AAD03129.2|  255|Caenorhabditis elegans Hypothetical
           protein F23C8.5 protein.
          Length = 255

 Score =  196 bits (479), Expect = 9e-51
 Identities = 97/175 (55%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
 Frame = +3

Query: 24  GTRRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGKQAIDDDSNQTAQMTAAL 203
           G  +A+HV+V  AE   L+  HVAK L K+ + EK D V +GKQAIDDDS+QTA + A L
Sbjct: 79  GADKAVHVQVTDAEAGKLESFHVAKALQKIVEQEKFDAVFLGKQAIDDDSSQTAPILAGL 138

Query: 204 LDWPQGTFASKIEKTD-GALTITREIDGGLEVIKTKIPAVLSADLRLNEPRYATLPNIMX 380
           L+WPQ  +ASK+E    G + +TREIDGGL+ IK K+P VLSADLRLNEPRYATLPNIM 
Sbjct: 139 LEWPQALYASKVEDAGAGHMKVTREIDGGLDTIKVKVPFVLSADLRLNEPRYATLPNIMK 198

Query: 381 XXXXXXXXXXXXDLGVDLAPRIKVVSVEDPPVRQAGSIIPDVDTLVAKLKEGGHV 545
                       DL VD+ P+ + + V +PPVRQAG  + DV  LVAKLKE G V
Sbjct: 199 AKKKPLKNIPIKDLNVDITPQTETLEVTEPPVRQAGGFVDDVSALVAKLKEKGFV 253


>AF025472-5|AAB71076.1|  423|Caenorhabditis elegans Hypothetical
           protein ZK250.7 protein.
          Length = 423

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 426 VDLAPRIKVVSVEDPPVRQAGSIIPDVDTLVAKLKEGGHV 545
           +D+  R+K++ V+D P  +   ++      ++ +KEGG +
Sbjct: 254 IDVEVRVKIIEVKDVPCLEKSFVLSHTIKNMSNIKEGGSI 293


>AF040652-5|AAB95022.2|  378|Caenorhabditis elegans Hypothetical
           protein T05A8.5 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 261 LEHHQSFLSLMQMFLVANLIKQQSSVLSGWSHHL 160
           L H+Q+ L+  ++ L   LI+Q S  +SG SH L
Sbjct: 344 LIHYQAKLTAQRVILDVQLIQQHSMAMSGSSHAL 377


>AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin
           protein 3 protein.
          Length = 409

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
 Frame = -2

Query: 530 LKLSNESVD-IRYDGASLSDW---RIFHRDHLDTRCQVHPKVF-GTYFFERLLLCFHDVR 366
           ++L+N S+  I  DG +L +    R+FH +   TR +   ++F GT F  +  +   D R
Sbjct: 11  IQLTNASLPPICVDGYTLVNGKCLRLFHEETYHTRAEQTCRIFEGTLFDVKNAI---DNR 67

Query: 365 QCSISWFIQSQISTQYSWDFCLDN 294
             +I+ FI SQ+ T +   FC +N
Sbjct: 68  --AIASFIGSQVETVWMGLFCFNN 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,327,611
Number of Sequences: 27780
Number of extensions: 320499
Number of successful extensions: 801
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)