Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0177
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43430.1 68418.m05310 electron transfer flavoprotein beta sub...   163   7e-41
At5g27210.1 68418.m03246 expressed protein weak similarity to se...    29   2.0  
At4g16110.1 68417.m02442 two-component responsive regulator fami...    28   6.2  
At3g11760.1 68416.m01443 expressed protein                             28   6.2  
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD...    28   6.2  
At4g37270.1 68417.m05275 cadmium/zinc-transporting ATPase, putat...    27   8.2  

>At5g43430.1 68418.m05310 electron transfer flavoprotein beta
           subunit family protein contains Pfam profile: PF01012
           electron transfer flavoprotein, beta subunit
          Length = 251

 Score =  163 bits (397), Expect = 7e-41
 Identities = 83/177 (46%), Positives = 109/177 (61%), Gaps = 2/177 (1%)
 Frame = +3

Query: 21  IGTRRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGKQAIDDDSNQTAQMTAA 200
           +G  R IHVE          P+ +AKIL  L+  E   L+ +GKQAIDDD NQT QM AA
Sbjct: 78  MGADRGIHVETNSI----FLPLTIAKILKSLADVENPGLIFLGKQAIDDDCNQTGQMVAA 133

Query: 201 LLDWPQGTFASKI--EKTDGALTITREIDGGLEVIKTKIPAVLSADLRLNEPRYATLPNI 374
           LL WPQ TFASK+  +K     T+ RE+DGGLE +   +PAV++ DLRLN+PRYA+LPNI
Sbjct: 134 LLGWPQATFASKVVLDKDKNVATVDREVDGGLETLNVDLPAVITTDLRLNQPRYASLPNI 193

Query: 375 MXXXXXXXXXXXXXDLGVDLAPRIKVVSVEDPPVRQAGSIIPDVDTLVAKLKEGGHV 545
           M             DL VD+   I+++ V +PP R++G ++  VD L+ KLK   HV
Sbjct: 194 MKAKSKPIKKMTVQDLKVDIKSDIEILEVTEPPKRKSGVMVSSVDELIDKLKNEAHV 250


>At5g27210.1 68418.m03246 expressed protein weak similarity to seven
           transmembrane domain orphan receptor [Mus musculus]
           GI:4321619
          Length = 297

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 237 SLMQMFLVANLIKQQSSVLSGWSHHLWPVCQQ*LSLPSHLVTVLLRFLQHE 85
           +L  ++LVA+     ++    W + +  VC   L LP   +T L  F Q E
Sbjct: 224 ALYSLYLVASAFTANNAHFGFWLYGIMSVCYHALYLPLLYITFLADFFQEE 274


>At4g16110.1 68417.m02442 two-component responsive regulator family
           protein / response regulator family protein similar to
           ARR2 protein GI:4210451 from [Arabidopsis thaliana];
           contains Pfam profile: PF00072 response regulator
           receiver domain
          Length = 644

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = -3

Query: 346 SFSRRSALSTAGIFVLITSKPPSISRVIVRAPSVFSIFDANVP 218
           S SRRS L+  G   +  S P + SRV+    SVF+ F A++P
Sbjct: 425 SVSRRSDLT--GALAVRNSIPETNSRVLPTTHSVFNNFPADLP 465


>At3g11760.1 68416.m01443 expressed protein 
          Length = 702

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 244 FSIFDANVPCGQSNKAAVICAVWLESSSMACL 149
           FS+F   +  GQ NKA V+   +L  +  AC+
Sbjct: 107 FSVFTNGMKQGQKNKAPVVGTAFLNLAEYACV 138


>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative similar to sucrose
           synthase GI:6682841 from [Citrus unshiu]
          Length = 942

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 22/52 (42%), Positives = 27/52 (51%)
 Frame = +3

Query: 93  AKILAKLSQDEKADLVIVGKQAIDDDSNQTAQMTAALLDWPQGTFASKIEKT 248
           +KIL +L  D K DL+I G      D N  A + A  L   QGT A  +EKT
Sbjct: 402 SKILQRL--DCKPDLII-GNYT---DGNLVASLMATKLGVTQGTIAHALEKT 447


>At4g37270.1 68417.m05275 cadmium/zinc-transporting ATPase, putative
           (HMA1) contains InterPro accession IPR001757: ATPase,
           E1-E2 type; identical to Potential
           cadmium/zinc-transporting ATPase HMA1 (EC 3.6.3.3) (EC
           3.6.3.5) (Swiss-Prot:Q9M3H5) [Arabidopsis thaliana];
           identical to cDNA putative transcription factor (MYB73)
           mRNA, partial cds GI:3941503
          Length = 819

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 418 SLALTFLRGFFFAFMMLGSVAYRGSFSRRSALSTA 314
           SLA+ FL  F F +  L + A RGS  R   L  A
Sbjct: 374 SLAIAFLGPFLFKWPFLSTAACRGSVYRALGLMVA 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,392,289
Number of Sequences: 28952
Number of extensions: 296327
Number of successful extensions: 730
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)