Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0175
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    27   2.4  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    27   2.4  
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    26   4.2  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   5.6  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   7.3  
SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar...    25   7.3  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   7.3  

>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 540 RFFTTVCVHLIILFVVALLYGK 475
           RFFTT  + ++++ ++ +LY K
Sbjct: 191 RFFTTAIIAILVILILLVLYSK 212


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 303 HGEKGAK*RLRASGISKKNRTSFECSSNGPETEEMPRFVE 422
           H EK A   L A+ +SK++ ++F C    P T  +  +V+
Sbjct: 132 HHEKKALVTLMATKVSKEDASNFGCLVEEPSTGRVLHYVD 171


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 382 DEHSNDVLFFFDMPEALS-LHLAPFSPWF 299
           D + ND + + ++  +L  L++AP SPWF
Sbjct: 192 DMNDNDDIGYQNLANSLGKLYVAPVSPWF 220


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = -2

Query: 532 HYCVRTPYHFVCCSSLVR*KFFHPKKEFPDIFFPRTASTKRGISSVSGPLDEHSNDVLFF 353
           H+     YH+  C SLV    F+    F  I  P     ++  SS+      +S   +  
Sbjct: 64  HHFTIACYHYSLCLSLVALLLFYTLYPFQSITLPLMPFLEKTESSILTISHVYSPPTIIT 123

Query: 352 FD-MPEALSLHLAPF 311
           FD     L +H+ PF
Sbjct: 124 FDGFKRLLRMHV-PF 137


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 18/72 (25%), Positives = 28/72 (38%)
 Frame = -2

Query: 472 FFHPKKEFPDIFFPRTASTKRGISSVSGPLDEHSNDVLFFFDMPEALSLHLAPFSPWFCL 293
           F  P  +F   F P T+S    +   S   D +    LFF    + L  H  P+ P   +
Sbjct: 309 FSQPMPQFSSSFVPGTSSIVPTLHPASAQEDFNLQHSLFFKLKLKFLPPHKLPWIPSLDV 368

Query: 292 TPSEGPTVSAYV 257
           +    P +  Y+
Sbjct: 369 SSFSLPPIDYYL 380


>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 258 FGISLNSRLHSFYHCWSPNRPRATTS*PVIYTRVF 154
           F IS N R+    H W+ NR         +YT ++
Sbjct: 71  FNISSNPRVSLLVHDWTTNRQETDPDASSLYTLLY 105


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 544 CSLLHYCVRTPYHFVCCSSL 485
           C  L +C+   YH   CSSL
Sbjct: 36  CICLRWCISKEYHEFTCSSL 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,840
Number of Sequences: 5004
Number of extensions: 39256
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)