Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0175
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0125 + 8738770-8739237,8739266-8739742                           27   7.5  
05_07_0075 - 27513927-27514220,27514806-27515117,27515203-275153...    27   9.9  

>05_03_0125 + 8738770-8739237,8739266-8739742
          Length = 314

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 231 EGANSKKSQT*AETVGPSDGVKQNHGEKGAK 323
           EGAN    +   E  G  DGVK NH + G K
Sbjct: 181 EGANPSAEE---EAAGRRDGVKPNHSDGGEK 208


>05_07_0075 -
           27513927-27514220,27514806-27515117,27515203-27515342,
           27515502-27515565,27515637-27516083,27516169-27516303,
           27517620-27517737,27517857-27517876
          Length = 509

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 460 KKEFPDIFFPRTASTKRGI--SSVSGPLDEHSNDVLFFFDM 344
           +K+ PD  F R    +  +  + ++GP     +D LFFFD+
Sbjct: 257 EKDLPDTIFVRAYEDRMDLLRAVITGPAGTPYHDGLFFFDI 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,585,807
Number of Sequences: 37544
Number of extensions: 222457
Number of successful extensions: 548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)