Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0175
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44251| Best HMM Match : Transposase_5 (HMM E-Value=0.072)           38   0.004
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         30   1.1  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   30   1.4  
SB_293| Best HMM Match : DnaJ (HMM E-Value=7.6e-37)                    29   2.5  
SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)                   29   3.3  
SB_23576| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_7868| Best HMM Match : Abhydrolase_1 (HMM E-Value=4e-16)            28   5.8  
SB_52091| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_23157| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_22508| Best HMM Match : DM (HMM E-Value=8.1e-10)                    27   7.6  
SB_13660| Best HMM Match : MtrG (HMM E-Value=3.4)                      27   7.6  
SB_53845| Best HMM Match : WGR (HMM E-Value=4.2)                       27   7.6  
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)                27   7.6  
SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)                   27   7.6  
SB_5975| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_44251| Best HMM Match : Transposase_5 (HMM E-Value=0.072)
          Length = 221

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 16/52 (30%), Positives = 34/52 (65%)
 Frame = +1

Query: 220 IKAVKARIQRNPKRKQKLLALQMGLSRTTVKRVLNEDLGLRAYRRKTGHRLN 375
           I AV+  + R+P++  +  + ++G++R +++RVL  DL L  Y+ +  H+L+
Sbjct: 85  IAAVRDSVGRSPRKSVRRRSQELGMTRESLRRVLTSDLHLYPYKIQIKHKLS 136


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +1

Query: 259  RKQKLLALQMGLSRTTVKRVLNEDLGLRAYRRKTGHRL 372
            R+Q++LAL   +SR++V RVL+    +R  RR TG  L
Sbjct: 3336 RQQRVLALSQSISRSSVYRVLSRIRIIRGQRR-TGRAL 3372


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -1

Query: 422 FNKARHLFSLRSIRRAFKRCPVFLRYARSPKSSFSTLFTVVLLNPI*RANSFCLRLG 252
           F +  +   ++ I  A K  P F  YA SP+  +   F    ++P  R + + + LG
Sbjct: 692 FEEGGNAIMVKEINDALKSGPAFRGYAISPQRGYGPAFRGYAISPRQRGSGYTIPLG 748


>SB_293| Best HMM Match : DnaJ (HMM E-Value=7.6e-37)
          Length = 238

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 546 VARFFTTVCVHLIILFVVALLYGKNFF 466
           +ARF    C+ L+ILF +  L G++F+
Sbjct: 1   MARFHVYFCISLLILFSIQTLAGRDFY 27


>SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)
          Length = 894

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 279 GQQFLLTFGI-SLNSRLHSFYHC 214
           GQ   LTFG  SLN R++S +HC
Sbjct: 138 GQNHCLTFGYHSLNQRINSTWHC 160


>SB_23576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 45  VIVLHRCGYAPIQIFNILXKFEYNQKIRLSYHQTI 149
           V++ H     PI IF+   K + N+ IRLSYH  I
Sbjct: 70  VVLTHGVPEEPINIFHSSHKTD-NEPIRLSYHNNI 103


>SB_7868| Best HMM Match : Abhydrolase_1 (HMM E-Value=4e-16)
          Length = 289

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 475 KFFHPKKEFPDIFFPRTASTKRGISSVSG 389
           K   P ++FPD FFPR AS    +  V G
Sbjct: 94  KSIPPVRDFPDEFFPRDASDAGMLMKVLG 122


>SB_52091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1775

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 466  EKIFTVQESYNKQNDKVYAHSSEE 537
            E++FTV + YN  N K YA+   E
Sbjct: 1148 EEVFTVGQRYNNTNQKNYAYRLRE 1171


>SB_23157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 466 EKIFTVQESYNKQNDKVYAHSSEE 537
           E++FTV + YN  N K YA+   E
Sbjct: 71  EEVFTVGQRYNNTNQKNYAYRLRE 94


>SB_22508| Best HMM Match : DM (HMM E-Value=8.1e-10)
          Length = 450

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 232 KARIQRNPKRKQKLLALQMGLSRTTVKRVLNED 330
           KA  +R PK+KQK+   + GL  T    +L  D
Sbjct: 240 KAHEKREPKKKQKIECRKNGLDNTIQDMILPND 272


>SB_13660| Best HMM Match : MtrG (HMM E-Value=3.4)
          Length = 567

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 466 EKIFTVQESYNKQNDKVYAHSSEE 537
           E++FTV + YN  N K YA+   E
Sbjct: 307 EEVFTVGQRYNNTNQKNYAYRLRE 330


>SB_53845| Best HMM Match : WGR (HMM E-Value=4.2)
          Length = 201

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 466 EKIFTVQESYNKQNDKVYAHSSEE 537
           E++FTV + YN  N K YA+   E
Sbjct: 8   EEVFTVGQRYNNTNQKNYAYRLRE 31


>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
          Length = 2293

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 276 GPSDGVKQNHGEKGAK*RLRASGISKKNR 362
           G SD +K NHG++  + +L  +G   KN+
Sbjct: 606 GTSDNIKSNHGKEKDRAQLDLTGNDNKNK 634


>SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)
          Length = 1216

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 466 EKIFTVQESYNKQNDKVYAHSSEE 537
           E++FTV + YN  N K YA+   E
Sbjct: 325 EEVFTVGQRYNNTNQKRYAYRLRE 348


>SB_5975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 233 RREFKEIPNVSRNCWPFRW 289
           RRE    P  SR+CWP  W
Sbjct: 52  RREGTSTPLTSRDCWPKAW 70


>SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 466 EKIFTVQESYNKQNDKVYAHSSEE 537
           E++FTV + YN  N K YA+   E
Sbjct: 335 EEVFTVGQRYNNTNQKNYAYRLRE 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,085,256
Number of Sequences: 59808
Number of extensions: 276518
Number of successful extensions: 708
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)